Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   G3T58_RS17845 Genome accession   NZ_CP048687
Coordinates   3487515..3488294 (+) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus paranthracis strain MN1F     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3482515..3493294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T58_RS17825 trmFO 3483169..3484473 (+) 1305 WP_002028254.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  G3T58_RS17830 xerC 3484539..3485438 (+) 900 WP_001101229.1 tyrosine recombinase XerC -
  G3T58_RS17835 hslV 3485481..3486023 (+) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  G3T58_RS17840 hslU 3486046..3487437 (+) 1392 WP_154982019.1 ATP-dependent protease ATPase subunit HslU -
  G3T58_RS17845 codY 3487515..3488294 (+) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  G3T58_RS17850 rpsB 3488645..3489346 (+) 702 WP_000111483.1 30S ribosomal protein S2 -
  G3T58_RS17855 tsf 3489450..3490337 (+) 888 WP_001018580.1 translation elongation factor Ts -
  G3T58_RS17860 pyrH 3490404..3491126 (+) 723 WP_000042663.1 UMP kinase -
  G3T58_RS17865 frr 3491129..3491686 (+) 558 WP_000531500.1 ribosome recycling factor -
  G3T58_RS17870 uppS 3491772..3492548 (+) 777 WP_000971301.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=422347 G3T58_RS17845 WP_000421288.1 3487515..3488294(+) (codY) [Bacillus paranthracis strain MN1F]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=422347 G3T58_RS17845 WP_000421288.1 3487515..3488294(+) (codY) [Bacillus paranthracis strain MN1F]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAATTCTTACATGAACTTGCTAAATTGAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment