Detailed information NTG0422261

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: G3T13_RS00005
• Genome accession: NZ_CP048686
• Coordinates: 2294440..1212 (+)
• Length: 815 a.a.
• NCBI ID: WP_061774867.1
• Uniprot ID: -
• Organism: Lactococcus raffinolactis strain KACC 13441
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 2289440..6212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
-	clpC	2294440..1212 (+)	-2293227	-	-	Regulator

Sequence

Protein

• Length: 815 a.a.
• Molecular weight: 89611.41 Da
• Isoelectric Point: 5.6559

>NTDB_id=422261 G3T13_RS00005 WP_061774867.1 2294440..1212(+) (clpC) [Lactococcus raffinolactis strain KACC 13441]
MTQNYTHILEDILKTARVFAAGNGYDYAETSHVLAGMLSSNDSFGQNILTDHDVTIEMALDEIEQHQLPEKMQTVQNIQF
SPKVEQLLLEADALAAQNHLAETGSEHLLYVILTDDDNVAKKLLELNKIKITEIVKDLIELGNMNVKKIAKKAVTPMGKR
DIASGVAAASITPTLDSVARDVTEDARQGRIDPMIGRDKEIERVIHILSRRTKNNPVLVGEPGVGKSAIIEGLAQRMIDG
NIPANMQGVRLMSLNIANVVAGTKFRGEFEDRMTAIVDEVSQDANTIVFVDELHTIVGAGGGTDSVTDASNIMKPALARG
EFQLIGATTFNEYQKYIEKDAALERRFAKVTVEEPSSDESIAILQGLQSKFEAFHQVNFDADAVKAAVQLSVRYMPSRRL
PDKAIDLLDEAAAAVKISAKNNLSEQSKLDKKASQLDEQLQEAIINQDFVLAKSLNKDLQKLEAKREKLTVKTKSSRVSE
GDVFAVVSNLTGVPVTQMSQSEMTRLINLEKELHKRVIGQSEAVTAVASAIRRSRSGISDDRRPMGSFMFLGPTGVGKTE
LAKALAETVFGDENSMIRIDMSEYMEKFNTSRLVGAPPGYVGYDEGGQLTEQVRNKPYAVVLFDEAEKAHPDVFNLLLQI
LDDGFITDGKGRKVDFRNTIIIMTSNLGATSLRDDKTVGFGAANASTDYVAMKSRILEELKKRYRPEFLNRIDESIVFHP
LSEQELSDIVKIMAKPLIKRLAERHITLKLSATAYQLIAKNGFEPEYGARPIRKALEKKLENPLSDKILSGEIKAGNSVT
VGVSKGELTIKVID

Nucleotide

• Length: 0 bp

>NTDB_id=422261 G3T13_RS00005 WP_061774867.1 2294440..1212(+) (clpC) [Lactococcus raffinolactis strain KACC 13441]

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-65)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (91-138)

• AAA lid domain (AAA_lid_9) (357-456)

• ATPase family associated with various cellular activities (AAA) (AAA) (217-334)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-801)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	62.222	99.509	0.619
clpC	Streptococcus pneumoniae Rx1	49.337	100	0.502
clpC	Streptococcus pneumoniae D39	49.337	100	0.502
clpC	Streptococcus thermophilus LMD-9	49.041	100	0.502
clpC	Streptococcus pneumoniae TIGR4	49.216	100	0.501
clpC	Streptococcus thermophilus LMG 18311	48.801	100	0.5
clpC	Streptococcus mutans UA159	47.368	100	0.486
clpC	Bacillus subtilis subsp. subtilis str. 168	47.922	100	0.482
clpE	Streptococcus pneumoniae TIGR4	46.646	78.747	0.367
clpE	Streptococcus pneumoniae Rx1	46.646	78.747	0.367
clpE	Streptococcus pneumoniae D39	46.646	78.747	0.367
clpE	Streptococcus pneumoniae R6	46.646	78.747	0.367
clpE	Streptococcus mutans UA159	46.178	78.747	0.364