Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LYSZa7_RS28730 Genome accession   NZ_CP061699
Coordinates   6196272..6196997 (+) Length   241 a.a.
NCBI ID   WP_200200091.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LYSZa7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6191272..6201997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYSZa7_RS28700 (LYSZa7_28615) - 6191392..6192270 (-) 879 WP_200200088.1 5-oxoprolinase subunit B family protein -
  LYSZa7_RS28705 (LYSZa7_28620) - 6192272..6193648 (-) 1377 WP_200200089.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  LYSZa7_RS28710 (LYSZa7_28625) - 6193659..6193907 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  LYSZa7_RS28715 (LYSZa7_28630) - 6193984..6194742 (-) 759 WP_200200090.1 5-oxoprolinase subunit PxpA -
  LYSZa7_RS28720 (LYSZa7_28635) - 6194860..6195786 (+) 927 WP_023435400.1 LysR family transcriptional regulator -
  LYSZa7_RS28725 (LYSZa7_28640) - 6195840..6196133 (+) 294 WP_003084806.1 hypothetical protein -
  LYSZa7_RS28730 (LYSZa7_28645) comF 6196272..6196997 (+) 726 WP_200200091.1 ComF family protein Machinery gene
  LYSZa7_RS28735 (LYSZa7_28650) - 6197039..6197359 (+) 321 WP_200200092.1 YfiM family lipoprotein -
  LYSZa7_RS28740 (LYSZa7_28655) - 6197427..6198185 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  LYSZa7_RS28745 (LYSZa7_28660) - 6198247..6199221 (+) 975 WP_003084794.1 serine/threonine protein kinase -
  LYSZa7_RS28750 (LYSZa7_28665) rarD 6199424..6200320 (+) 897 WP_003103301.1 EamA family transporter RarD -
  LYSZa7_RS28755 (LYSZa7_28670) - 6201010..6201525 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27032.59 Da        Isoelectric Point: 11.2216

>NTDB_id=422196 LYSZa7_RS28730 WP_200200091.1 6196272..6196997(+) (comF) [Pseudomonas aeruginosa strain LYSZa7]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELGLRCDP
HSLRRVLDTPAQQGLDARVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=422196 LYSZa7_RS28730 WP_200200091.1 6196272..6196997(+) (comF) [Pseudomonas aeruginosa strain LYSZa7]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCATGGTCGCGCCAGCAGTGTCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGGCCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTAGATACTCCGGCCCAGCAGGGCCTGGACGCGAGGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382

Multiple sequence alignment