Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ICI41_RS24240 Genome accession   NZ_CP061376
Coordinates   5207705..5208130 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain HS17-127     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5202705..5213130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICI41_RS24225 (ICI41_24220) pilX 5203269..5203856 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  ICI41_RS24230 (ICI41_24225) pilY1 5203868..5207359 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  ICI41_RS24235 (ICI41_24230) pilY2 5207361..5207708 (+) 348 WP_021264112.1 type 4a fimbrial biogenesis protein PilY2 -
  ICI41_RS24240 (ICI41_24235) comF 5207705..5208130 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  ICI41_RS24245 (ICI41_24240) ispH 5208177..5209121 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ICI41_RS24250 (ICI41_24245) fkpB 5209207..5209647 (-) 441 WP_043089468.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ICI41_RS24255 (ICI41_24250) lspA 5209640..5210149 (-) 510 WP_003094728.1 signal peptidase II -
  ICI41_RS24260 (ICI41_24255) ileS 5210142..5212973 (-) 2832 WP_031689113.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=421508 ICI41_RS24240 WP_003094721.1 5207705..5208130(+) (comF) [Pseudomonas aeruginosa strain HS17-127]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=421508 ICI41_RS24240 WP_003094721.1 5207705..5208130(+) (comF) [Pseudomonas aeruginosa strain HS17-127]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383