Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LCGT_RS08670 Genome accession   NC_015930
Coordinates   1710867..1711802 (-) Length   311 a.a.
NCBI ID   WP_014025404.1    Uniprot ID   A0A6L2ZWA9
Organism   Lactococcus garvieae ATCC 49156     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1705867..1716802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCGT_RS08645 (LCGT_1728) - 1705915..1706775 (-) 861 WP_014025402.1 CvfB family protein -
  LCGT_RS08650 (LCGT_1729) frr 1706883..1707440 (-) 558 WP_003133324.1 ribosome recycling factor -
  LCGT_RS08655 (LCGT_1730) pyrH 1707470..1708186 (-) 717 WP_003133322.1 UMP kinase -
  LCGT_RS08660 (LCGT_1731) - 1708277..1709470 (-) 1194 WP_003133320.1 acetate kinase -
  LCGT_RS08665 (LCGT_1732) - 1709589..1710782 (-) 1194 WP_014025403.1 acetate kinase -
  LCGT_RS08670 (LCGT_1733) comYH 1710867..1711802 (-) 936 WP_014025404.1 class I SAM-dependent methyltransferase Machinery gene
  LCGT_RS08675 (LCGT_1734) - 1711848..1712078 (-) 231 WP_003133314.1 DUF3165 family protein -
  LCGT_RS08680 (LCGT_1735) typA 1712153..1713994 (-) 1842 WP_003133313.1 translational GTPase TypA -
  LCGT_RS08685 (LCGT_1736) - 1714315..1714527 (+) 213 WP_003133311.1 YqgQ family protein -
  LCGT_RS08690 (LCGT_1737) - 1714520..1715485 (+) 966 WP_014025405.1 ROK family glucokinase -
  LCGT_RS08695 (LCGT_1738) - 1715505..1715885 (+) 381 WP_003133308.1 rhodanese-like domain-containing protein -
  LCGT_RS08700 (LCGT_1739) - 1715925..1716371 (-) 447 WP_003133306.1 Dps family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35138.19 Da        Isoelectric Point: 4.6737

>NTDB_id=42114 LCGT_RS08670 WP_014025404.1 1710867..1711802(-) (comYH) [Lactococcus garvieae ATCC 49156]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRVLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLESVDVVMSDLPVGYYPDDETARHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLADLADRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=42114 LCGT_RS08670 WP_014025404.1 1710867..1711802(-) (comYH) [Lactococcus garvieae ATCC 49156]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTGGTTCTTGAAAATATTATGGCAATTCAAGCGGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAGTTTGCATCTCTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAGTGGCAAAAGCTGTTTCAGTTTGTCTTGCTTCAAGGGTCACGTGTC
GCACCAATGCAAGCAAATCATAATTTAACACCAGATTCTATTGGGTTTATCTTTAATTTTATCATTGAAGAGTTGCACAA
AGAAAGAAAGATTCGTGTACTAGAATTTGGCTCAGGAACAGGGAATTTAGCGGAAACGCTCTTGGTTCACATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATTGACGCCGTGAAACCACAGCCCTTGGAGTCTGTAGATGTTGTGATGAGTGATCTCCCGGTTGG
TTATTATCCAGACGATGAAACTGCTCGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCACTTAATGA
TTGAGCAATCCTTTAAGTATCTGAAGGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAATTTTTGAAGGCTTGGATTAAAGAACATGCACATGTTGCTGCAGTCATTACATTGCCTTCGTCACTCTTTAAAGG
TGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAAACAAATACACCAACTTTTGTTTACCCCTTGGCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(132-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L2ZWA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.677

99.678

0.495
  comYH Streptococcus mutans UA159

49.355

99.678

0.492

Multiple sequence alignment