Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GZH82_RS06855 Genome accession   NZ_CP048279
Coordinates   1480429..1482828 (+) Length   799 a.a.
NCBI ID   WP_162681854.1    Uniprot ID   A0A6P1X065
Organism   Staphylococcus sp. MI 10-1553     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1475429..1487828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH82_RS06835 (GZH82_06835) - 1476252..1477265 (-) 1014 WP_162681851.1 LLM class flavin-dependent oxidoreductase -
  GZH82_RS06840 (GZH82_06840) - 1477479..1478624 (+) 1146 WP_162683024.1 cysteine desulfurase family protein -
  GZH82_RS06845 (GZH82_06845) mnmA 1478624..1479736 (+) 1113 WP_162681852.1 tRNA 2-thiouridine(34) synthase MnmA -
  GZH82_RS06850 (GZH82_06850) - 1479752..1480426 (+) 675 WP_162681853.1 tetratricopeptide repeat protein -
  GZH82_RS06855 (GZH82_06855) recD2 1480429..1482828 (+) 2400 WP_162681854.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GZH82_RS06860 (GZH82_06860) alaS 1483076..1485706 (+) 2631 WP_162681855.1 alanine--tRNA ligase -
  GZH82_RS06865 (GZH82_06865) - 1485769..1486041 (+) 273 WP_014613743.1 IreB family regulatory phosphoprotein -
  GZH82_RS06870 (GZH82_06870) ruvX 1486034..1486462 (+) 429 WP_162681856.1 Holliday junction resolvase RuvX -
  GZH82_RS06875 (GZH82_06875) - 1486476..1486802 (+) 327 WP_162681857.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90399.70 Da        Isoelectric Point: 4.6253

>NTDB_id=420551 GZH82_RS06855 WP_162681854.1 1480429..1482828(+) (recD2) [Staphylococcus sp. MI 10-1553]
MENPTLFDHTFIKGAVEMILFHNADSHYTVLKVEIEETNGDFDDMATVVGYFPNMVEDETYTFKGQVVQHARYGKQLKAE
TFQKEIPHTKDAVIAYLSSELFKGIGKKTAESIVNTIGENAIHDILKDESVIERVPKLSKAKQRQIVEQIYANQESEQVM
IRLNELGFGSKLAMDIYKFYKSDTLTVIDKNPYQLVYDIKGVGFNKADQLAQQLGIHPEHPDRLKAGLLYLVEDTCIKQG
HTYLPQEALINETIQLLSQDKESSIDHDIMTQILTELVEEKRLVNQDEMVAIPSLYYSEIKSTQNLYKIFANREHLTTFD
ASDIQLHIGEIEEVNEVHYAPSQKEALEYAIQHKVMLLTGGPGTGKTTVIKGIVQLYAEIHGISLDYDDYSDEDDYPVVL
AAPTGRASKRLHEATGLEAMTIHRLIGWNQDTKPQDKLDNEIHAKLIIIDEMSMVDTWLFHQFMDAVPIDAQVVLVGDED
QLPSVGPGQVFKDLIDANVLPRINLTEVYRQQDGSSIIDLAHRMKLGEKVDITQRFHDRSFIPCQTDQIPQVVEKVVNNA
VQKGYTMADIQVLAPMYRGNAGIKKLNQILQAILNPLTDESQREIEFGDVLFRKGDKVLQLINRPNDNVFNGDIGVIVGI
FWAKENALNKDVVVVDYDGNEITYLRSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSIV
FLGDADAFNFGLATAGQTRLTQLQTFLTQYFNPEDGDDNADTDTDSAEFILTEATMFKVHPMINMGEVTPYDFLEIDKV

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=420551 GZH82_RS06855 WP_162681854.1 1480429..1482828(+) (recD2) [Staphylococcus sp. MI 10-1553]
ATGGAAAATCCAACACTGTTTGACCATACTTTTATTAAAGGCGCTGTAGAAATGATTTTGTTTCACAATGCGGACAGCCA
TTATACAGTGCTTAAAGTTGAAATTGAAGAAACGAATGGTGACTTTGATGATATGGCAACAGTTGTTGGATACTTTCCAA
ATATGGTGGAAGATGAGACGTACACTTTTAAAGGTCAAGTCGTGCAACATGCAAGATATGGGAAGCAATTAAAAGCAGAA
ACGTTTCAAAAAGAAATTCCTCATACAAAAGATGCCGTTATTGCGTATTTATCCAGTGAATTGTTTAAAGGGATTGGTAA
AAAAACGGCTGAATCCATTGTCAATACGATAGGTGAAAATGCGATTCATGACATTTTAAAAGACGAATCTGTCATAGAAC
GGGTGCCTAAACTGTCTAAAGCGAAACAACGACAAATTGTAGAGCAGATTTATGCCAACCAAGAAAGTGAACAAGTGATG
ATTCGATTGAACGAACTTGGTTTTGGTTCAAAGCTAGCGATGGACATTTACAAGTTCTATAAAAGTGATACGTTAACCGT
GATCGACAAAAACCCTTACCAACTTGTTTATGACATTAAAGGGGTTGGTTTTAATAAAGCGGACCAACTGGCTCAACAGC
TCGGTATTCATCCAGAGCATCCAGATCGATTAAAAGCCGGATTACTTTATTTAGTTGAAGATACGTGTATTAAACAAGGT
CATACATATTTACCTCAAGAAGCGTTAATCAATGAAACGATTCAATTGTTGTCTCAGGACAAAGAGTCAAGTATCGATCA
TGACATAATGACGCAAATTTTAACTGAATTGGTTGAAGAAAAGCGTCTAGTGAATCAAGATGAAATGGTTGCCATCCCAA
GTCTTTATTATTCGGAAATTAAAAGTACGCAAAATTTATATAAAATATTTGCCAATCGAGAACATTTAACAACATTTGAT
GCGTCAGATATTCAATTACATATTGGGGAAATTGAAGAGGTCAATGAAGTACATTATGCCCCTTCTCAAAAAGAGGCCTT
AGAATATGCCATCCAACATAAAGTCATGCTCCTCACGGGTGGACCAGGTACAGGGAAAACGACTGTCATTAAAGGGATCG
TCCAGTTATACGCAGAAATTCATGGTATCTCATTAGATTACGATGACTATTCAGATGAAGATGATTATCCGGTCGTTTTA
GCCGCACCAACCGGTAGAGCATCCAAACGTTTACATGAAGCGACAGGGTTAGAAGCGATGACCATTCACCGTTTAATCGG
TTGGAATCAAGATACGAAACCTCAAGACAAATTAGATAACGAGATTCATGCCAAATTAATTATTATTGATGAAATGTCAA
TGGTCGACACATGGCTGTTCCATCAATTTATGGATGCGGTCCCTATAGATGCACAAGTTGTGTTAGTCGGCGATGAAGAC
CAATTGCCGTCAGTCGGCCCGGGTCAAGTTTTTAAAGATCTCATTGATGCGAATGTATTACCACGCATTAATTTAACTGA
AGTTTATCGCCAACAGGACGGATCAAGTATTATCGATTTGGCGCATCGTATGAAACTCGGTGAAAAAGTCGATATTACCC
AACGTTTTCACGACCGTTCGTTCATTCCTTGTCAAACTGATCAAATTCCACAAGTGGTAGAAAAAGTCGTGAACAACGCG
GTACAAAAAGGATATACAATGGCAGATATTCAAGTGTTGGCACCGATGTATCGCGGTAATGCAGGAATTAAAAAGTTGAA
TCAAATCTTGCAAGCTATTTTAAACCCATTAACAGACGAATCGCAGCGTGAAATCGAATTTGGCGATGTGCTTTTCCGTA
AAGGGGATAAAGTACTTCAACTGATTAATCGACCGAATGACAATGTATTCAACGGTGATATTGGTGTCATTGTCGGTATA
TTTTGGGCAAAAGAAAATGCGCTCAATAAAGATGTTGTTGTCGTCGATTATGATGGGAACGAAATCACATACTTACGCTC
TGATTTGACGGAATTGACACATGCATATTGTACCTCGATTCATAAAGCGCAAGGTTCAGAGTTTCCGATTGTCATTATGC
CTATTGTTAAGCAGTATTATAGAATGTTGCAAAAGCCGATTTTATATACAGGATTAACACGTGCCAAACAATCAATCGTT
TTTCTTGGTGATGCAGATGCTTTTAATTTCGGCTTAGCGACTGCGGGTCAAACGCGATTAACGCAATTACAAACGTTTTT
AACACAATATTTTAATCCAGAAGATGGCGACGATAACGCAGATACTGATACAGATTCGGCTGAGTTCATTTTAACTGAAG
CGACAATGTTTAAAGTCCATCCGATGATTAATATGGGTGAAGTAACACCGTATGACTTTTTAGAAATTGACAAAGTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-546)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1X065

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.435

99.75

0.493

Multiple sequence alignment