Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SPPN_RS10285 Genome accession   NC_015875
Coordinates   1971255..1972208 (-) Length   317 a.a.
NCBI ID   WP_000345093.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1966255..1977208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS10260 (SPPN_10385) - 1967017..1967640 (-) 624 WP_000932634.1 hypothetical protein -
  SPPN_RS10265 (SPPN_10390) jag 1967691..1968677 (-) 987 WP_000260000.1 RNA-binding cell elongation regulator Jag/EloR -
  SPPN_RS10270 (SPPN_10395) - 1968695..1969519 (-) 825 WP_000728104.1 membrane protein insertase YidC -
  SPPN_RS10275 (SPPN_10400) rnpA 1969494..1969865 (-) 372 WP_000739252.1 ribonuclease P protein component -
  SPPN_RS10280 (SPPN_10405) - 1970014..1971204 (-) 1191 WP_000167777.1 acetate kinase -
  SPPN_RS10285 (SPPN_10410) comYH 1971255..1972208 (-) 954 WP_000345093.1 class I SAM-dependent methyltransferase Machinery gene
  SPPN_RS14445 - 1972540..1972611 (+) 72 WP_148255730.1 SHP2/SHP3 family peptide pheromone -
  SPPN_RS10290 (SPPN_10415) - 1972811..1973944 (+) 1134 WP_148255727.1 MFS transporter -
  SPPN_RS10295 (SPPN_10420) - 1973946..1974965 (+) 1020 WP_000612003.1 pyridoxal-phosphate dependent enzyme -
  SPPN_RS10300 (SPPN_10425) - 1974940..1975923 (+) 984 WP_000864435.1 hypothetical protein -
  SPPN_RS10305 (SPPN_10430) - 1976067..1977128 (+) 1062 WP_000604329.1 ATP-grasp domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35611.87 Da        Isoelectric Point: 4.2952

>NTDB_id=42030 SPPN_RS10285 WP_000345093.1 1971255..1972208(-) (comYH) [Streptococcus pseudopneumoniae IS7493]
MDFEKIEQAYTYLLENVQIIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDVIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVAARHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFIYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=42030 SPPN_RS10285 WP_000345093.1 1971255..1972208(-) (comYH) [Streptococcus pseudopneumoniae IS7493]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAATTATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATTTGGATGGTGAGACTGAGCTAAACCAGGTCAAAGACAACAATC
AAGCCCTTAAACGCTTAGCGCTTCGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCAGATGTCATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGGTCTGGGATGGGAATTCTGGGCGCTACTTTCTTAACCTCTCTTGCTAAGA
AAGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGTTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCAGCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTTA
TGGAACAAGGACTTAAGTACCTCAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGCCCTCAA
AGTGATTTGTTGAAAGGGTGGTTGAAAGAAGAAGCAAGTCTGGTTGCTATGATTAGTTTGCCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTATTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment