Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SPPN_RS09630 Genome accession   NC_015875
Coordinates   1848321..1850081 (-) Length   586 a.a.
NCBI ID   WP_000428272.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1843321..1855081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS09585 (SPPN_09725) ytpR 1844116..1844742 (-) 627 WP_000578305.1 YtpR family tRNA-binding protein -
  SPPN_RS09590 (SPPN_09730) - 1844758..1845075 (-) 318 WP_000615773.1 thioredoxin family protein -
  SPPN_RS09595 (SPPN_09735) - 1845072..1845371 (-) 300 WP_001013973.1 DUF4651 domain-containing protein -
  SPPN_RS12375 (SPPN_09740) - 1845609..1845806 (-) 198 Protein_1928 N-acetylmuramoyl-L-alanine amidase family protein -
  SPPN_RS09610 (SPPN_09745) - 1846048..1846722 (-) 675 WP_000725711.1 LiaF transmembrane domain-containing protein -
  SPPN_RS09615 (SPPN_09750) - 1846727..1847173 (-) 447 WP_000776605.1 LytTR family DNA-binding domain-containing protein -
  SPPN_RS09620 (SPPN_09755) - 1847393..1847896 (-) 504 WP_000800914.1 phosphatase PAP2 family protein -
  SPPN_RS09625 (SPPN_09760) - 1847893..1848255 (-) 363 WP_000078815.1 DUF2200 family protein -
  SPPN_RS09630 (SPPN_09765) rcrQ 1848321..1850081 (-) 1761 WP_000428272.1 ABC transporter ATP-binding protein Regulator
  SPPN_RS11445 (SPPN_09770) - 1850071..1851839 (-) 1769 Protein_1934 ABC transporter ATP-binding protein -
  SPPN_RS09645 (SPPN_09780) - 1851814..1852284 (-) 471 WP_000360544.1 MarR family winged helix-turn-helix transcriptional regulator -
  SPPN_RS09650 (SPPN_09785) - 1852461..1853177 (-) 717 WP_000532877.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64900.78 Da        Isoelectric Point: 5.0526

>NTDB_id=42020 SPPN_RS09630 WP_000428272.1 1848321..1850081(-) (rcrQ) [Streptococcus pseudopneumoniae IS7493]
MENKKMSLWKQSKPYLAGLQFALLIAFLATIVSNIITVYGPIRIKEMTNIIASGLETSVDVAAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRRAIAEKINRLPLGYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSSLLVVAVLVTM
FGMNWILALVTVVSTLIGFVFVFVFMGKSQGFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFAKLNHRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGHISIGIIVAFMAYVRIFSQPLSQIAQGITSLQQASAAMGRVFE
FLAEEEMEDESHKERQLSDMKGQVVFDRVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQTGISDERVIEASKAVGIHHFIMTLPDAYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDELMAQAGFYADLYNSQFTEYEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=42020 SPPN_RS09630 WP_000428272.1 1848321..1850081(-) (rcrQ) [Streptococcus pseudopneumoniae IS7493]
ATGGAAAATAAGAAAATGTCTCTTTGGAAACAGAGTAAACCCTATCTTGCAGGCCTCCAGTTTGCCCTTCTGATAGCCTT
TCTAGCAACAATCGTATCCAATATCATTACTGTTTATGGGCCGATTCGCATCAAGGAAATGACTAATATTATTGCCAGTG
GTCTGGAAACAAGTGTGGATGTCGCGGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTGATTTATGTGATCGGACTTCTA
TCAAATTATTTACAGGCCTTTCTGTTTACAACAGCTATTCAACGTTTTTCAGAGCGTTTGAGAAGAGCTATTGCAGAGAA
AATCAATCGCCTACCATTGGGATATTTTGATGGACACTCTCAGGGGGATACTTTGTCTCGTGTAACCAATGACGTTGACA
CTGCAGCTCAGTCCCTCAATCAAAGTCTGGGAACAGTTCTTTCATCTAGTTTACTGGTCGTGGCAGTCTTGGTAACCATG
TTTGGAATGAACTGGATTTTAGCCTTGGTGACGGTTGTGTCAACCCTTATTGGTTTTGTTTTCGTGTTCGTCTTTATGGG
CAAATCGCAGGGCTTCTTTAAGAGTCAACAACAGGATTTGGCGGCTGTCAATGGCTATGTGGAGGAAATGTACTCTGGCC
ATAATGTGGTGACCAGTTACAATGCCATCGAGAGCACGAAAGAAGAGTTTGCGAAATTAAACCATCGTCTGTATGATAGT
ATCTGGAAATCTCAATTTATTTCAGGGATTATGATGCCGATTATGATGTTTATTGGGAACTTTAGCTATGCCTTGGTGAT
TATCGTTGGTGCGGCCTTGGCCTTAAATGGGCACATCAGTATCGGGATTATCGTTGCCTTTATGGCCTACGTTCGTATCT
TTTCTCAGCCTCTTTCACAAATCGCCCAAGGGATTACTAGTTTGCAGCAGGCTAGTGCAGCCATGGGACGTGTCTTCGAA
TTCCTAGCTGAAGAGGAAATGGAAGACGAATCCCATAAAGAAAGACAATTGAGCGATATGAAAGGTCAAGTAGTCTTTGA
TCGAGTCTCCTTTGGTTATACACCAGAGCGAACCATTATCCATGACTTTTCTGCGACTGCTCATGCAGGTCAAAAGGTTG
CCATTGTCGGACCGACCGGAGCTGGGAAGACAACCATTGTCAATCTTTTGATGAAGTTTTATGAGATTGATAAGGGAAGT
ATCCGCATCGATGGCGTGGATACCAAGGAGATGAAGCGTTCGGAAGTACATGATGCCTTTTCAATGGTCTTGCAGGACAC
TTGGCTCTTTGAAGGGACTATTCGCGACAATCTCATATATAACCAAACAGGTATTAGTGATGAGCGTGTGATTGAAGCCA
GCAAGGCTGTAGGGATTCACCACTTTATTATGACCCTACCAGATGCTTATGATACCGTCTTGGATGATACAGTGACCTTG
TCTGTCGGACAAAAACAACTCTTGACCATTGCTCGTGCTTTGTTAAAAGATGCGCCACTCCTAATCCTAGATGAGGCGAC
TTCTTCTGTTGATACCCGTACAGAGGAATTGATTCAGAAAGCCATGGATCGTTTGATGGAGGGCAGAACTTCCTTCGTCA
TCGCCCACCGCTTGTCAACCATTCGTAATGCTGATCTTATTCTGGTTATGAAAGATGGAAATATCATCGAGCAAGGCAAT
CATGATGAGCTAATGGCGCAAGCTGGTTTCTACGCTGACCTCTACAACAGTCAATTTACAGAATACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.954

99.147

0.664

Multiple sequence alignment