Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M662_RS09165 Genome accession   NZ_CP048117
Coordinates   1741416..1742195 (+) Length   259 a.a.
NCBI ID   WP_026577471.1    Uniprot ID   A0A7Z2SWH1
Organism   Bacillus sp. SB49     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1736416..1747195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M662_RS09150 (M662_09140) xerC 1738527..1739426 (+) 900 WP_008637894.1 tyrosine recombinase XerC -
  M662_RS09155 (M662_09145) hslV 1739432..1739977 (+) 546 WP_008637896.1 ATP-dependent protease subunit HslV -
  M662_RS09160 (M662_09150) hslU 1739990..1741387 (+) 1398 WP_008637897.1 HslU--HslV peptidase ATPase subunit -
  M662_RS09165 (M662_09155) codY 1741416..1742195 (+) 780 WP_026577471.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M662_RS09170 (M662_09160) - 1742338..1743668 (+) 1331 WP_162129281.1 IS3 family transposase -
  M662_RS09175 (M662_09165) flgB 1744026..1744418 (+) 393 WP_026577470.1 flagellar basal body rod protein FlgB -
  M662_RS09180 (M662_09170) flgC 1744420..1744872 (+) 453 WP_026577469.1 flagellar basal body rod protein FlgC -
  M662_RS09185 (M662_09175) fliE 1744894..1745199 (+) 306 WP_235601484.1 flagellar hook-basal body complex protein FliE -
  M662_RS09190 (M662_09180) fliF 1745264..1746868 (+) 1605 WP_008639528.1 flagellar basal-body MS-ring/collar protein FliF -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29071.19 Da        Isoelectric Point: 4.6457

>NTDB_id=419954 M662_RS09165 WP_026577471.1 1741416..1742195(+) (codY) [Bacillus sp. SB49]
MKLLERARRINAMLQTTTGKSVDFNEMSATMRDVIEANTFVVSRRGKLLGFAINQEIENERMNAMFSERQFPQEYTQNLF
NIKETTPDIDIDSEYTAFPVENKELFKEGLTTIVPIIGGGQRLGTLILSRLNGSFNDDDLLLAEYGATVVGMEILHEKTE
EIEQEARSKAVVQMAISSLSYSELEAIEHIFDELEGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNNFLLELQKLRTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=419954 M662_RS09165 WP_026577471.1 1741416..1742195(+) (codY) [Bacillus sp. SB49]
ATGAAACTTCTAGAACGTGCACGCAGAATCAATGCTATGTTACAAACAACAACAGGAAAATCGGTGGATTTTAATGAAAT
GTCCGCAACGATGAGAGACGTTATCGAAGCGAATACATTCGTTGTAAGCCGCCGTGGGAAGCTGCTCGGCTTCGCCATCA
ACCAGGAAATTGAAAACGAGCGCATGAACGCAATGTTCTCTGAACGACAGTTTCCACAGGAGTATACCCAAAATTTATTC
AACATTAAGGAAACGACGCCGGACATCGATATTGACAGCGAGTATACGGCTTTCCCTGTAGAGAACAAGGAATTGTTCAA
AGAAGGATTGACGACAATCGTACCAATCATCGGAGGTGGTCAGCGCTTAGGAACGTTGATCCTGAGCCGTCTGAACGGAA
GTTTTAATGATGATGACCTGCTGCTTGCTGAGTATGGTGCAACCGTTGTCGGAATGGAGATCCTGCACGAGAAGACAGAA
GAGATTGAACAGGAAGCCCGCAGCAAAGCTGTCGTTCAAATGGCAATTTCTTCTCTTTCCTACAGTGAATTGGAGGCCAT
CGAGCATATCTTCGATGAACTGGAAGGTAATGAAGGACTACTTGTTGCCAGTAAAATTGCAGACCGTGTCGGAATCACAC
GTTCCGTCATTGTAAACGCGCTTCGTAAGCTTGAAAGTGCGGGTGTCATCGAATCACGCTCATTGGGAATGAAAGGTACG
TATATCAAAGTGCTTAATAATAATTTCCTACTGGAGCTTCAAAAGCTTCGTACGAATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2SWH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

77.992

100

0.78
  codY Lactococcus lactis subsp. lactis strain DGCC12653

45.669

98.069

0.448

Multiple sequence alignment