Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HYC88_RS30710 Genome accession   NZ_CP061072
Coordinates   7118546..7119913 (+) Length   455 a.a.
NCBI ID   WP_073805940.1    Uniprot ID   -
Organism   Streptomyces sp. CB00271     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7113546..7124913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYC88_RS30690 (HYC88_30690) - 7114611..7115402 (-) 792 WP_073805936.1 peptidylprolyl isomerase -
  HYC88_RS30695 (HYC88_30695) - 7115554..7116243 (+) 690 WP_073805937.1 MBL fold metallo-hydrolase -
  HYC88_RS30700 (HYC88_30700) hisS 7116259..7117521 (+) 1263 WP_073805938.1 histidine--tRNA ligase -
  HYC88_RS30705 (HYC88_30705) - 7117834..7118472 (+) 639 WP_073805939.1 vitamin K epoxide reductase family protein -
  HYC88_RS30710 (HYC88_30710) rarA 7118546..7119913 (+) 1368 WP_073805940.1 replication-associated recombination protein A Machinery gene
  HYC88_RS30715 (HYC88_30715) - 7119934..7120635 (-) 702 WP_073805941.1 DUF2470 domain-containing protein -
  HYC88_RS30720 (HYC88_30720) rpsD 7120827..7121441 (+) 615 WP_003970343.1 30S ribosomal protein S4 -
  HYC88_RS30725 (HYC88_30725) - 7121459..7123666 (-) 2208 WP_073805942.1 tetratricopeptide repeat protein -
  HYC88_RS30730 (HYC88_30730) - 7123889..7124350 (+) 462 WP_073805943.1 DUF948 domain-containing protein -
  HYC88_RS30735 (HYC88_30735) - 7124358..7124705 (+) 348 WP_073805944.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48502.76 Da        Isoelectric Point: 5.8528

>NTDB_id=419929 HYC88_RS30710 WP_073805940.1 7118546..7119913(+) (rarA) [Streptomyces sp. CB00271]
MEPDLFTAAAEDRQEKDPSSSPLAARMRPRVLDEVVGQQHLLKPGSPLRRLVEGSGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
IISPLLSRSLLLTLESLTDDDLRDLLRRALTDERGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAAAGAAIATGEAEI
TLETLEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQDDVRRGLAGPVPAHLRDGHYKGAAKLGHAQGYVYP
HDVQGGIAAQQYAPDAVRDRQYYTPTRYGAEARYADVVERVRERLGRSGESDDRP

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=419929 HYC88_RS30710 WP_073805940.1 7118546..7119913(+) (rarA) [Streptomyces sp. CB00271]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGCCCGGAT
GCGTCCCCGTGTCCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTGAAGCCGGGCTCGCCGCTGCGCCGCCTCGTCGAGG
GGAGCGGCGGTCCGGCCGGCGCGTCCTCGGTCATCCTGTGGGGCCCGCCCGGCACCGGCAAGACGACTCTGGCGTACGTG
GTCAGCAAGGCGACCAACAAGCGCTTCGTCGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCCGTCATCGA
GAGCGCGCGCCGCGCCACCGGAGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTGCTCCCCGCCGTGGAGAACCGCTGGGTCACCCTCATCGCCGCCACCACGGAGAATCCGTACTTCTCG
ATCATCTCCCCGCTGCTGTCGCGGTCCCTGCTGCTCACCCTGGAATCGCTGACCGACGACGACCTGCGTGATCTGCTGCG
CCGGGCGCTGACCGACGAGCGGGGGCTCGGCGGGGCGGTCACCCTGCCCGAGGACGCCGAGGCGCATCTGCTGCGCATCG
CGGGCGGCGACGCGCGCCGGGCCCTGACCGCGCTGGAGGCCGCGGCGGGCGCGGCCATCGCCACGGGCGAGGCGGAGATC
ACCCTGGAGACGCTGGAGGCGACCGTCGACCGCGCCGCCGTGAAGTACGACCGTGACGGCGACCAGCACTACGACGTCGC
CAGCGCGCTCATCAAGTCGATCCGCGGCTCCGACGTGGACGCCGCTCTGCACTACCTGGCCCGCATGATCGAGGCGGGGG
AGGACCCGCGCTTCATCGCCCGCCGGCTGATGATCTCGGCCAGCGAGGACATCGGGCTGGCCGACCCCACCGCGCTGCCG
ACCGCCGTGGCCGCCGCCCAGGCGGTGGCCATGATCGGCTTCCCGGAGGCGGCGCTCACCCTCAGCCACGCCACCATCGC
CCTGGCGCTCGCCCCCAAGTCCAACGCGGCGACGCTGGCGATCTCCGCCGCGCAGGACGACGTGCGCAGGGGGCTCGCGG
GGCCCGTCCCGGCCCATCTGCGCGACGGCCATTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGCTATGTCTATCCG
CACGACGTGCAGGGCGGCATCGCCGCCCAGCAGTACGCCCCGGACGCGGTCCGCGACCGGCAGTACTACACCCCCACCCG
CTACGGCGCCGAGGCGCGGTACGCGGACGTCGTCGAGCGCGTCCGCGAGCGTCTGGGCCGTTCCGGCGAGAGCGACGACA
GACCCTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-275)

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.78

94.725

0.424

Multiple sequence alignment