Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   GSF71_RS04055 Genome accession   NZ_CP048116
Coordinates   818046..818606 (-) Length   186 a.a.
NCBI ID   WP_101378062.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 813046..823606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS04025 rplA 814038..814727 (-) 690 WP_004270847.1 50S ribosomal protein L1 -
  GSF71_RS04030 rplK 814826..815251 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  GSF71_RS10105 - 815377..815613 (-) 237 WP_274381225.1 alpha/beta hydrolase -
  GSF71_RS10110 - 815636..816235 (-) 600 WP_274381226.1 alpha/beta fold hydrolase -
  GSF71_RS04040 nusG 816936..817484 (-) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  GSF71_RS04045 secE 817582..817761 (-) 180 WP_011375365.1 preprotein translocase subunit SecE -
  GSF71_RS04050 rpmG 817771..817920 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  GSF71_RS04055 sigH 818046..818606 (-) 561 WP_101378062.1 sigma-70 family RNA polymerase sigma factor Regulator
  GSF71_RS04060 - 818684..819217 (-) 534 WP_016265667.1 NYN domain-containing protein -
  GSF71_RS04065 rlmB 819221..820108 (-) 888 WP_162100874.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GSF71_RS04070 - 820095..820502 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  GSF71_RS04075 cysS 820499..821905 (-) 1407 WP_162100875.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22107.31 Da        Isoelectric Point: 7.4752

>NTDB_id=419920 GSF71_RS04055 WP_101378062.1 818046..818606(-) (sigH) [Latilactobacillus sakei strain MBEL1397]
MEQTKRDKMLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSMDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=419920 GSF71_RS04055 WP_101378062.1 818046..818606(-) (sigH) [Latilactobacillus sakei strain MBEL1397]
ATGGAACAAACAAAGCGCGACAAAATGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGGCCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGCGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATGGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGATCAGTTGAAACGGGGCCAATCAAGGTGTCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

96.237

100

0.962

Multiple sequence alignment