Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IBL27_RS09220 Genome accession   NZ_CP061071
Coordinates   1883981..1885249 (+) Length   422 a.a.
NCBI ID   WP_002308293.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1878981..1890249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS09185 (IBL27_09185) - 1880068..1880262 (+) 195 WP_002268480.1 hypothetical protein -
  IBL27_RS09945 - 1880290..1880586 (-) 297 Protein_1775 LacI family DNA-binding transcriptional regulator -
  IBL27_RS09195 (IBL27_09195) - 1880648..1881391 (-) 744 WP_002308286.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  IBL27_RS09200 (IBL27_09200) prmA 1881392..1882345 (-) 954 WP_002308288.1 50S ribosomal protein L11 methyltransferase -
  IBL27_RS09205 (IBL27_09205) - 1882573..1882869 (-) 297 WP_002272503.1 LlsX family protein -
  IBL27_RS09210 (IBL27_09210) - 1882882..1883352 (-) 471 WP_002281617.1 DUF3013 family protein -
  IBL27_RS09215 (IBL27_09215) - 1883500..1883991 (+) 492 WP_002308291.1 GNAT family N-acetyltransferase -
  IBL27_RS09220 (IBL27_09220) rarA 1883981..1885249 (+) 1269 WP_002308293.1 replication-associated recombination protein A Machinery gene
  IBL27_RS09235 (IBL27_09235) - 1885653..1887569 (-) 1917 WP_002311340.1 heavy metal translocating P-type ATPase -
  IBL27_RS09240 - 1887668..1887874 (+) 207 Protein_1783 MerR family DNA-binding transcriptional regulator -
  IBL27_RS09245 (IBL27_09245) - 1888596..1889282 (-) 687 WP_002309255.1 4'-phosphopantetheinyl transferase family protein -
  IBL27_RS09250 (IBL27_09250) - 1889396..1890155 (-) 760 Protein_1785 IS5 family transposase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46554.94 Da        Isoelectric Point: 6.5109

>NTDB_id=419841 IBL27_RS09220 WP_002308293.1 1883981..1885249(+) (rarA) [Streptococcus mutans B04Sm5]
MPNNLALRMRPRDISEVIGQKHLVGQGKIISRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAMQ
VALTDTERGFDFEVKLDDDALDFIAQATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYITMDKDGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTIIAYEDIGLANPDAQIHTVTALEAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKAIADLHKSGTIPIPRHLRDGHYAGSKELGNAQDYLYPHAYPEKWVKQQYLPDKLKGANYFTA
NETGKYERALGANKSKIDQLSQ

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=419841 IBL27_RS09220 WP_002308293.1 1883981..1885249(+) (rarA) [Streptococcus mutans B04Sm5]
ATGCCAAATAACCTCGCACTTCGTATGCGCCCTCGAGATATCTCTGAAGTTATCGGACAAAAGCATCTAGTCGGTCAAGG
CAAGATTATTTCGCGAATGGTCACTGCTAACCGTCTGTCTTCCATGATTCTTTATGGTCCTCCCGGAATTGGAAAAACCT
CAATCGCTTCTGCCATCGCTGGTACAACCAAATTTGCCTTTCGTACCTTCAATGCAACAACCGACACTAAAAAACGCCTA
CAGGAAATTGCTGAAGAAGCTAAATTTTCAGGTGGTTTGGTTTTACTCCTAGATGAAATTCATCGTCTAGATAAAACTAA
GCAAGATTTTCTTCTCCCCTTGTTGGAAAACGGACAAATTATCATGATTGGCGCAACCACTGAAAATCCCTTTTTCTCTG
TCACCCCTGCCATTCGCTCGCGTGTTCAGATTTTTGAATTAGAGCCATTATCAAATGAGGATATCAAAAAAGCTATGCAA
GTAGCTCTGACAGATACAGAGCGCGGTTTTGATTTTGAAGTCAAATTAGATGATGATGCTCTTGACTTCATTGCGCAAGC
CACCAATGGCGACTTGCGCTCTGCCTATAATTCTCTTGATTTAGCCATCATGTCCACCCAGCCAGATGACAATGGTAGTC
GCCACATCACCTTAGACACTGTTGAAAACAGCCTACAGCGCAGCTACATTACCATGGACAAGGATGGTGATGCTCACTAT
GATATCTTATCCGCCTTACAAAAATCTATTCGCGGTTCAGATGTCAATGCCAGCCTTCACTATGCTGCCAGATTAATCGA
AGCTGGTGATCTGCCAAGTCTAGCTAGACGTTTAACCATTATTGCTTACGAAGATATTGGCTTAGCCAATCCTGATGCAC
AGATTCATACAGTGACAGCGCTGGAAGCAGCCCAAAGAATTGGTTTTCCTGAAGCCCGCATTTTAATTGCCAATGTGGTT
ATTGATTTAGCACTCTCACCTAAGTCTAATTCCGCTTATGTTGCTATGGACAAGGCCATTGCAGATCTTCATAAGAGCGG
CACGATCCCTATTCCTCGCCACTTGCGTGATGGTCATTACGCTGGCAGTAAAGAATTGGGCAATGCCCAAGATTATCTCT
ACCCGCATGCCTATCCGGAAAAATGGGTTAAGCAGCAATATTTACCAGACAAACTCAAAGGAGCTAACTATTTTACTGCC
AATGAAACAGGTAAATACGAACGGGCATTAGGAGCTAATAAGAGTAAGATTGACCAGCTCTCCCAATAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.951

96.445

0.578