Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   IBL27_RS05690 Genome accession   NZ_CP061071
Coordinates   1143690..1145426 (-) Length   578 a.a.
NCBI ID   WP_024784361.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1138690..1150426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS05680 (IBL27_05680) - 1140871..1141791 (-) 921 WP_002269023.1 AEC family transporter -
  IBL27_RS05685 (IBL27_05685) rcrQ 1141907..1143679 (-) 1773 WP_002283302.1 ABC transporter ATP-binding protein Regulator
  IBL27_RS05690 (IBL27_05690) rcrP 1143690..1145426 (-) 1737 WP_024784361.1 ABC transporter ATP-binding protein Regulator
  IBL27_RS05695 (IBL27_05695) - 1145882..1147750 (-) 1869 WP_002307997.1 ABC-F family ATP-binding cassette domain-containing protein -
  IBL27_RS05700 (IBL27_05700) - 1147753..1148958 (-) 1206 WP_002307996.1 CCA tRNA nucleotidyltransferase -
  IBL27_RS05705 (IBL27_05705) dapB 1148955..1149722 (-) 768 WP_002307995.1 4-hydroxy-tetrahydrodipicolinate reductase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65164.95 Da        Isoelectric Point: 9.4037

>NTDB_id=419805 IBL27_RS05690 WP_024784361.1 1143690..1145426(-) (rcrP) [Streptococcus mutans B04Sm5]
MIYIWSYLKKYPKWLLLDILGALLFVVVNLGLPTALARMIDQGITPADKQALYFWAFIMFIIVLSGIVGRITLAYASGRL
TTTMIRDMRNDMYDKLQEYSHHEYKKIGVSSLVTRMTSDAFVLMQFAEMSLRMGIVTPLMMVSSVIMVLVTSPSLAWIVV
FAIPFLILVIYYVAAKTRPLSEKQQNTLDKINQYVRENLTGLRVIRTFARENFQEERFDLKNRSYEKTSNRLFKLTGLTE
ALFVQIIIIMIVAIVWFSLDPLKQGTIKIGDLVAFIEYSFHALFSFLIFANIFTMYPRMAVSSKRIQEVMAMPISIDPNI
NGIKETKSKGYLEFDNVTFAYPGETESPVLHDISFKARPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVHD
YNLKALRQKIGFIPQKALLFTGTIGENLKYGKRDASLAELHSAADIAQAKEFIESRAEKFDSHLAEGGSNLSGGQKQRLS
IARAVVKKPDIYIFDDSFSALDYKTDSLLRQRLKEVTGNSTVLIVAQRVGTIMNADQIIVLDEGEIVGRGSHDELMKSNA
IYREIANSQLNQQSLTQE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=419805 IBL27_RS05690 WP_024784361.1 1143690..1145426(-) (rcrP) [Streptococcus mutans B04Sm5]
ATGATATATATTTGGTCTTATTTAAAAAAATATCCCAAATGGTTACTATTGGACATTCTTGGTGCCCTTTTATTTGTTGT
TGTCAATTTGGGCTTACCGACAGCTCTGGCACGAATGATTGATCAAGGGATCACACCGGCTGATAAACAAGCTCTTTATT
TTTGGGCTTTTATTATGTTTATCATTGTTCTCTCAGGAATAGTCGGGCGTATTACCCTAGCCTATGCTTCTGGCAGATTA
ACCACGACCATGATTCGCGATATGCGCAATGATATGTATGATAAATTGCAAGAGTACTCCCATCACGAATATAAGAAAAT
TGGTGTCTCTTCCTTGGTTACACGTATGACCAGTGACGCCTTTGTACTTATGCAATTTGCAGAAATGTCCTTGCGGATGG
GAATTGTTACCCCCTTGATGATGGTCTCAAGTGTTATTATGGTTTTGGTGACTAGCCCATCTTTGGCTTGGATTGTAGTA
TTTGCTATTCCTTTTTTGATACTGGTGATTTATTATGTTGCTGCAAAAACACGCCCTTTGTCTGAAAAGCAGCAAAATAC
GCTTGACAAGATTAATCAGTACGTTCGTGAAAACTTAACGGGTCTACGTGTTATTCGTACCTTTGCGCGTGAAAATTTTC
AAGAAGAACGCTTTGACTTAAAAAACAGAAGTTATGAAAAGACTTCCAACAGACTATTTAAATTAACCGGACTCACAGAA
GCCCTGTTTGTTCAGATTATTATTATCATGATAGTAGCTATTGTTTGGTTTTCATTAGATCCGCTTAAGCAAGGGACTAT
TAAGATTGGTGATCTGGTTGCTTTTATTGAGTATAGTTTTCATGCTCTCTTTTCTTTTTTAATATTTGCTAATATTTTCA
CTATGTATCCGCGAATGGCTGTATCTAGCAAACGTATCCAAGAGGTAATGGCTATGCCTATTTCCATTGATCCCAATATA
AATGGCATTAAGGAGACTAAATCCAAAGGCTATTTGGAATTTGACAATGTGACCTTTGCCTATCCCGGTGAGACCGAAAG
TCCTGTCTTGCATGATATTTCTTTTAAAGCTAGACCGGGAGAAACGATTGCTTTTATTGGCAGTACAGGTTCAGGAAAGT
CGTCGCTTGTTAATTTGATTCCCCGTTTTTATGATGTAACTTTGGGTCGGATTCTGGTTGATGGTGTGGATGTCCATGAC
TATAATCTTAAGGCTCTGCGTCAGAAAATTGGTTTTATTCCGCAAAAAGCGCTGCTATTTACTGGAACCATTGGAGAAAA
TCTTAAGTATGGGAAAAGGGATGCTAGTTTGGCTGAACTGCATTCAGCTGCTGATATTGCACAAGCTAAAGAATTCATCG
AAAGTCGAGCTGAGAAATTTGATAGCCACTTAGCAGAAGGCGGCAGCAATCTTTCAGGGGGACAGAAGCAGCGCTTGTCT
ATTGCGCGTGCAGTTGTTAAGAAACCAGATATCTATATTTTTGATGATTCCTTTTCAGCCTTAGATTATAAGACGGATAG
TCTCCTGCGTCAGCGTTTGAAAGAAGTGACAGGCAATTCAACAGTGCTCATTGTAGCCCAACGTGTCGGAACTATTATGA
ATGCTGACCAGATTATTGTACTGGATGAAGGAGAAATTGTTGGTCGCGGCAGCCATGATGAACTCATGAAGTCCAATGCC
ATTTATCGTGAAATTGCCAACTCACAGCTCAATCAGCAAAGTTTAACGCAAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.838

95.329

0.37