Detailed information NTG0419625

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: IBC03_RS09495
• Genome accession: NZ_CP061025
• Coordinates: 1825271..1826539 (-)
• Length: 422 a.a.
• NCBI ID: WP_138496457.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 13496
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1820271..1831539

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBC03_RS09465 (IBC03_09490)	-	1820532..1821359 (+)	828	WP_232085691.1	radical SAM protein	-
IBC03_RS09470 (IBC03_09495)	-	1821352..1822893 (+)	1542	WP_014622049.1	ABC transporter ATP-binding protein	-
IBC03_RS09475 (IBC03_09500)	-	1823297..1823809 (-)	513	WP_014608793.1	helix-turn-helix transcriptional regulator	-
IBC03_RS09480 (IBC03_09505)	-	1824125..1824829 (+)	705	Protein_1817	site-specific integrase	-
IBC03_RS09495 (IBC03_09520)	rarA	1825271..1826539 (-)	1269	WP_138496457.1	replication-associated recombination protein A	Machinery gene
IBC03_RS09500 (IBC03_09525)	rpmB	1826709..1826897 (+)	189	WP_084826191.1	50S ribosomal protein L28	-
IBC03_RS09505 (IBC03_09530)	-	1827024..1827290 (+)	267	WP_002952186.1	IreB family regulatory phosphoprotein	-
IBC03_RS09510 (IBC03_09535)	ruvX	1827290..1827709 (+)	420	WP_011681732.1	Holliday junction resolvase RuvX	-
IBC03_RS09515 (IBC03_09540)	-	1827818..1828123 (+)	306	WP_011681733.1	DUF1292 domain-containing protein	-
IBC03_RS09520 (IBC03_09545)	-	1828336..1829982 (+)	1647	WP_138496459.1	hypothetical protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46448.01 Da
• Isoelectric Point: 7.0888

>NTDB_id=419625 IBC03_RS09495 WP_138496457.1 1825271..1826539(-) (rarA) [Streptococcus thermophilus strain 13496]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVEKSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALAELRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide

• Length: 1269 bp

>NTDB_id=419625 IBC03_RS09495 WP_138496457.1 1825271..1826539(-) (rarA) [Streptococcus thermophilus strain 13496]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCAAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCCTAGACATAGTGGAAAAAAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGAACTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-415)

• AAA C-terminal domain (AAA_assoc_2) (173-251)

• ATPase family associated with various cellular activities (AAA) (AAA) (42-144)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	59.427	99.289	0.59