Detailed information NTG0419397

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: IBB96_RS07790
• Genome accession: NZ_CP061023
• Coordinates: 1508425..1509210 (-)
• Length: 261 a.a.
• NCBI ID: WP_002951720.1
• Uniprot ID: Q5M305
• Organism: Streptococcus thermophilus strain 13499
• Function: repress the expression of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1503425..1514210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBB96_RS07755 (IBB96_07780)	gatC	1503486..1503788 (-)	303	WP_002884769.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	-
IBB96_RS07760 (IBB96_07785)	-	1503963..1504181 (-)	219	WP_242683841.1	glycosyltransferase	-
IBB96_RS10295	-	1504120..1504284 (-)	165	WP_242681665.1	glycosyltransferase	-
IBB96_RS07770 (IBB96_07795)	-	1504721..1506165 (-)	1445	Protein_1488	6-phospho-beta-glucosidase	-
IBB96_RS07775 (IBB96_07800)	msrA	1506318..1506827 (-)	510	WP_041827375.1	peptide-methionine (S)-S-oxide reductase MsrA	-
IBB96_RS07780 (IBB96_07805)	-	1506839..1507687 (-)	849	Protein_1490	MetQ/NlpA family ABC transporter substrate-binding protein	-
IBB96_RS07785 (IBB96_07810)	-	1507811..1508362 (-)	552	WP_002946999.1	isochorismatase family cysteine hydrolase	-
IBB96_RS07790 (IBB96_07815)	codY	1508425..1509210 (-)	786	WP_002951720.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
IBB96_RS07795 (IBB96_07820)	-	1509470..1510684 (-)	1215	WP_002951721.1	pyridoxal phosphate-dependent aminotransferase	-
IBB96_RS07800 (IBB96_07825)	-	1511039..1511491 (+)	453	WP_002946987.1	universal stress protein	-
IBB96_RS07805 (IBB96_07830)	-	1511671..1512242 (+)	572	Protein_1495	IS30 family transposase	-
IBB96_RS07810 (IBB96_07835)	-	1512314..1512487 (-)	174	WP_011681546.1	hypothetical protein	-
IBB96_RS07815 (IBB96_07840)	-	1512548..1512922 (-)	375	WP_011681547.1	membrane protein	-
IBB96_RS07820 (IBB96_07845)	pflA	1513134..1513934 (-)	801	WP_071417327.1	pyruvate formate-lyase-activating protein	-

Sequence

Protein

• Length: 261 a.a.
• Molecular weight: 28919.13 Da
• Isoelectric Point: 4.5802

>NTDB_id=419397 IBB96_RS07790 WP_002951720.1 1508425..1509210(-) (codY) [Streptococcus thermophilus strain 13499]
MANLLDKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEKFFKAKQLPEEYI
RGISRVYDTQENIGIDSDLTIFPVELKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDDDLILVEIASTVVGLQLLH
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide

• Length: 786 bp

>NTDB_id=419397 IBB96_RS07790 WP_002951720.1 1508425..1509210(-) (codY) [Streptococcus thermophilus strain 13499]
ATGGCAAATTTGCTTGATAAAACACGTAAAATTACTTCTATCTTGCAACGCTCAGTAGATAGTTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAGTTGGCAGATATTATTGATTGTAATGCTGCTATTGTAAATGGTGGAGGTGCTCTCCTTG
GTTTTGCTATGAAATACAAAACCAACAATGACCGTGTGGAAAAGTTTTTTAAAGCTAAACAACTTCCAGAGGAATACATA
CGTGGTATCAGCCGTGTTTATGATACTCAAGAAAATATCGGTATTGACAGTGACTTGACCATCTTCCCAGTGGAATTAAA
AGATGATTTCCCTGACGGTTTGACTACAATTGCACCAATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATTATTTGGC
GTAACGACCATGATTTTGTGGACGACGACCTTATCTTGGTTGAGATTGCATCTACAGTAGTTGGTTTGCAATTGTTGCAT
CTTCAAACAGAAAACTTGGAAGAAACGATTCGTAAACAAACAGCTATTAATATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTAGAAGGTCGTTTGACAGCCTCTGTTATCGCGGACCGTA
TCGGAATTACTCGTTCTGTTATTGTTAATGCTCTTCGTAAATTAGAATCAGCTGGTATTATTGAAAGTCGTTCGCTTGGT
ATGAAAGGCACTTACCTTAAAGTCCTTAACGAAGGTATCTACGACAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

• CodY GAF-like domain (CodY) (3-182)

• CodY helix-turn-helix domain (HTH_CodY) (201-261)

3D structure

• AlphaFold DB: Q5M305

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Lactococcus lactis subsp. lactis strain DGCC12653	64.591	98.467	0.636
codY	Bacillus subtilis subsp. subtilis str. 168	53.036	94.636	0.502