Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GWC93_RS03550 Genome accession   NZ_CP048003
Coordinates   703052..704851 (+) Length   599 a.a.
NCBI ID   WP_003577415.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain CACC 566     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 698052..709851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWC93_RS03535 (GWC93_03670) - 698972..699658 (+) 687 WP_016381754.1 cell wall-associated hydrolase -
  GWC93_RS03540 (GWC93_03675) brnQ 700299..701678 (+) 1380 WP_003586556.1 branched-chain amino acid transport system II carrier protein -
  GWC93_RS03545 (GWC93_03680) - 701829..702923 (-) 1095 WP_003577416.1 LCP family protein -
  GWC93_RS03550 (GWC93_03685) pepF 703052..704851 (+) 1800 WP_003577415.1 oligoendopeptidase F Regulator
  GWC93_RS03555 (GWC93_03690) - 704848..705729 (+) 882 WP_016363473.1 NAD(P)-dependent oxidoreductase -
  GWC93_RS03560 (GWC93_03695) - 705726..706574 (+) 849 WP_003577413.1 metallophosphoesterase -
  GWC93_RS03565 (GWC93_03700) - 706646..707443 (-) 798 WP_003586552.1 metal ABC transporter permease -
  GWC93_RS03570 (GWC93_03705) - 707440..708159 (-) 720 WP_003577411.1 metal ABC transporter ATP-binding protein -
  GWC93_RS03575 (GWC93_03710) - 708233..708577 (-) 345 WP_003563007.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67252.36 Da        Isoelectric Point: 5.6373

>NTDB_id=419273 GWC93_RS03550 WP_003577415.1 703052..704851(+) (pepF) [Lacticaseibacillus paracasei strain CACC 566]
MQHLPARAEVPTELTWDLTTIYPDDKAWQVDFEAVRQQAKEAAALKGTLGKSPEALVAGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNAAYQAMNAKAESLAADLASQLAFMDPEILAIPADQLTAWRDTESLKPYGHFIDAITVNRQHVLTTAAESLIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKDAFEALLRAYESLKNTFAQTLSGQIKA
HNFNALAHHYPDARAAAMASNHIPESVYTTLLDQVNAHLPLLHRYIALRKKILNVDQLHMYDIYTPLTGRPPLSFTLDQA
KDEALKALAPLGNDYLDHMREIFNNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTR
HHQPYVYGDYPIFVAEIASTTNENLLTDYFLKNTNDPKVRAYILNYYLDGFKGTVFRQAQFADFEHWIHQQDQHGEPLTA
TSMSSYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISGGEPEAVSRYIGYLKSGSSKY
AIDTMKAAGVDMTKPDYLEAAFSLFEQRLAELEEILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=419273 GWC93_RS03550 WP_003577415.1 703052..704851(+) (pepF) [Lacticaseibacillus paracasei strain CACC 566]
ATGCAACATTTACCGGCACGCGCAGAAGTCCCTACCGAATTGACATGGGATCTCACGACTATTTATCCAGATGACAAGGC
TTGGCAAGTTGACTTTGAAGCCGTTCGTCAGCAAGCAAAGGAAGCGGCAGCACTTAAGGGTACATTGGGCAAGTCGCCTG
AAGCACTTGTCGCAGGTATCAAAGCCGTTCTCGCGGTGTTCAGACGCTTTGAAAAGGTTTATGTCTATTCCAGCTTGAAA
AGTGATCAAGACACTGGCAATGCAGCGTATCAAGCCATGAATGCCAAAGCAGAAAGTCTGGCAGCTGATCTTGCCAGCCA
ATTAGCCTTCATGGATCCGGAAATTCTGGCGATTCCAGCCGATCAGCTGACCGCTTGGCGCGATACCGAAAGCCTCAAAC
CCTATGGCCACTTTATTGATGCCATCACTGTGAATCGCCAACACGTCCTGACCACAGCGGCTGAGTCATTAATTGCCAGT
GCTGGGGATGCGCTGAATGCCAGTCATGCAACCTTTAATGTGTTGAACAACTCCGACCTGCAATTTGGCTTTGTTGAAAA
TGAAGACGGTGAGACCGTGCAACTCAGCAATGGTTTGTATGGCCAACTCATTCGGTCAACAAATCGCAAGCTGCGTAAAG
ACGCGTTTGAGGCTTTGCTGCGGGCATATGAAAGTCTTAAGAATACCTTTGCTCAAACATTGAGTGGCCAGATCAAAGCT
CATAACTTCAATGCTTTAGCGCATCATTATCCCGATGCTCGCGCTGCTGCAATGGCAAGTAACCACATCCCCGAAAGTGT
CTACACAACACTGCTTGATCAAGTCAACGCTCACTTGCCATTACTACATCGCTATATTGCCTTACGTAAAAAGATTCTGA
ATGTCGATCAACTGCATATGTATGATATCTACACACCGCTGACCGGACGTCCGCCATTGAGTTTCACCCTCGATCAGGCA
AAAGACGAAGCCTTAAAGGCATTGGCTCCGCTGGGAAATGATTATTTAGATCATATGCGGGAAATCTTTAATAATCGTTA
CATTGATGTCGTCGAAAATAAGGGCAAACGGTCCGGCGCTTATTCCGGTGGCGCGTATGACACCAATCCGTTCATTTTAC
TGAACTGGCACGATGCCGTTGATGAATTGTACACTTTGGTTCACGAAACTGGTCACAGTGTGCACAGCTGGTACACTCGT
CATCACCAGCCTTACGTTTATGGCGACTACCCAATCTTCGTCGCAGAAATTGCCTCAACAACCAATGAAAATTTATTGAC
GGACTACTTCCTAAAAAACACCAATGATCCTAAAGTTCGGGCGTACATTTTGAATTACTATCTAGACGGCTTCAAAGGAA
CGGTCTTCCGTCAGGCTCAATTTGCTGACTTTGAACATTGGATTCATCAACAAGACCAGCATGGTGAACCATTGACGGCA
ACCAGCATGTCCTCCTATTATGCGGATCTCAATGCCCGTTATTACGGACCAGATGTTGCACGTGATCCTGAAATTGCCTT
TGAATGGGCTCGTATTCCACATTTCTATTACAATTATTATGTTTACCAGTACGCAACTGGTTTTGCCGCTGCCTCGACTC
TGGCCGCCGGCATCAGCGGTGGCGAACCAGAGGCGGTTTCCCGCTATATCGGCTACTTGAAATCTGGCAGTTCCAAGTAT
GCGATTGATACAATGAAAGCGGCCGGCGTTGATATGACCAAGCCAGATTATTTAGAAGCCGCCTTCTCACTATTTGAACA
ACGACTCGCTGAATTAGAAGAAATTTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.684

99.165

0.513

Multiple sequence alignment