Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GWK37_RS17500 Genome accession   NZ_CP048002
Coordinates   3532866..3533645 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain CACC 316     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3527866..3538645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK37_RS17480 (GWK37_17490) trmFO 3528553..3529860 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GWK37_RS17485 (GWK37_17495) xerC 3529930..3530847 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  GWK37_RS17490 (GWK37_17500) hslV 3530863..3531408 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  GWK37_RS17495 (GWK37_17505) hslU 3531425..3532828 (+) 1404 WP_061862191.1 HslU--HslV peptidase ATPase subunit -
  GWK37_RS17500 (GWK37_17510) codY 3532866..3533645 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GWK37_RS17505 (GWK37_17515) flgB 3533999..3534388 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  GWK37_RS17510 (GWK37_17520) flgC 3534388..3534840 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  GWK37_RS17515 (GWK37_17525) fliE 3534851..3535171 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  GWK37_RS17520 (GWK37_17530) fliF 3535214..3536824 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  GWK37_RS17525 (GWK37_17535) fliG 3536837..3537853 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  GWK37_RS17530 (GWK37_17540) fliH 3537846..3538601 (+) 756 WP_014417769.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=419266 GWK37_RS17500 WP_003154263.1 3532866..3533645(+) (codY) [Bacillus velezensis strain CACC 316]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=419266 GWK37_RS17500 WP_003154263.1 3532866..3533645(+) (codY) [Bacillus velezensis strain CACC 316]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGTATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATCCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment