Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GSS20_RS00680 Genome accession   NZ_CP047995
Coordinates   149078..149803 (-) Length   241 a.a.
NCBI ID   WP_017449060.1    Uniprot ID   A0A4Z6AQU4
Organism   Vibrio parahaemolyticus strain 20150710009     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144078..154803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSS20_RS00655 (GSS20_00720) - 145198..145689 (+) 492 WP_005458943.1 type II secretion system protein M -
  GSS20_RS00660 (GSS20_00725) - 145691..146452 (+) 762 WP_005496730.1 type II secretion system protein N -
  GSS20_RS00665 (GSS20_00730) cysQ 146738..147565 (-) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GSS20_RS00670 (GSS20_00735) nudE 147606..148175 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  GSS20_RS00675 (GSS20_00740) nfuA 148396..148980 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  GSS20_RS00680 (GSS20_00745) comF 149078..149803 (-) 726 WP_017449060.1 amidophosphoribosyltransferase Machinery gene
  GSS20_RS00685 (GSS20_00750) bioH 149888..150655 (+) 768 WP_025537133.1 pimeloyl-ACP methyl ester esterase BioH -
  GSS20_RS00690 (GSS20_00755) - 150779..151243 (+) 465 WP_005459035.1 hypothetical protein -
  GSS20_RS00695 (GSS20_00760) - 151379..153700 (-) 2322 WP_015296085.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27725.91 Da        Isoelectric Point: 8.9991

>NTDB_id=419121 GSS20_RS00680 WP_017449060.1 149078..149803(-) (comF) [Vibrio parahaemolyticus strain 20150710009]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=419121 GSS20_RS00680 WP_017449060.1 149078..149803(-) (comF) [Vibrio parahaemolyticus strain 20150710009]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z6AQU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment