Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GSR97_RS13570 | Genome accession | NZ_CP047990 |
| Coordinates | 2903940..2904470 (-) | Length | 176 a.a. |
| NCBI ID | WP_005466625.1 | Uniprot ID | Q87LA3 |
| Organism | Vibrio parahaemolyticus strain 20140723005 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2898940..2909470
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSR97_RS13550 (GSR97_14220) | - | 2899264..2899593 (-) | 330 | WP_140391545.1 | MSHA biogenesis protein MshK | - |
| GSR97_RS13555 (GSR97_14225) | gspM | 2899586..2900236 (-) | 651 | WP_005497276.1 | type II secretion system protein GspM | - |
| GSR97_RS13560 (GSR97_14230) | - | 2900233..2901678 (-) | 1446 | WP_015297339.1 | hypothetical protein | - |
| GSR97_RS13565 (GSR97_14235) | csrD | 2901690..2903699 (-) | 2010 | WP_029837280.1 | RNase E specificity factor CsrD | - |
| GSR97_RS13570 (GSR97_14240) | ssb | 2903940..2904470 (-) | 531 | WP_005466625.1 | single-stranded DNA-binding protein | Machinery gene |
| GSR97_RS13575 (GSR97_14245) | qstR | 2904749..2905393 (+) | 645 | WP_005480993.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| GSR97_RS13580 (GSR97_14250) | galU | 2905651..2906523 (+) | 873 | WP_005466627.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19563.62 Da Isoelectric Point: 4.9269
>NTDB_id=419103 GSR97_RS13570 WP_005466625.1 2903940..2904470(-) (ssb) [Vibrio parahaemolyticus strain 20140723005]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=419103 GSR97_RS13570 WP_005466625.1 2903940..2904470(-) (ssb) [Vibrio parahaemolyticus strain 20140723005]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.006 |
100 |
0.824 |
| ssb | Glaesserella parasuis strain SC1401 |
57.143 |
100 |
0.614 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.483 |