Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   IBC04_RS02750 Genome accession   NZ_CP061020
Coordinates   520769..522556 (+) Length   595 a.a.
NCBI ID   WP_180479620.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 24740     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 515769..527556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC04_RS10030 - 516027..516317 (+) 291 WP_232085720.1 macrolide ABC transporter -
  IBC04_RS10035 - 516314..516529 (+) 216 WP_232085874.1 hypothetical protein -
  IBC04_RS02735 (IBC04_02735) rplJ 516820..517323 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  IBC04_RS02740 (IBC04_02740) rplL 517398..517766 (+) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  IBC04_RS02745 (IBC04_02745) rcrP 519020..520756 (+) 1737 WP_011225637.1 ABC transporter ATP-binding protein Regulator
  IBC04_RS02750 (IBC04_02750) rcrQ 520769..522556 (+) 1788 WP_180479620.1 ABC transporter ATP-binding protein Regulator
  IBC04_RS02755 (IBC04_02755) queA 522654..523697 (-) 1044 WP_084825831.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  IBC04_RS02760 (IBC04_02760) - 523847..524548 (+) 702 WP_041829023.1 glucosamine-6-phosphate deaminase -
  IBC04_RS02765 (IBC04_02765) - 524714..526009 (-) 1296 WP_207563340.1 GHKL domain-containing protein -
  IBC04_RS02770 (IBC04_02770) - 526009..526719 (-) 711 WP_011680876.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66581.73 Da        Isoelectric Point: 5.1433

>NTDB_id=419053 IBC04_RS02750 WP_180479620.1 520769..522556(+) (rcrQ) [Streptococcus thermophilus strain 24740]
MKDNKKKTTHSSSFGRLWSYLQVYRFPLYLAIFLKIISVIMSVIEPVVIGLAITELTKNTLDIIKGVAGAHINVSYVGFV
LVFYLLRGLIYELASYYSNYFMTNAVQATVQDMRNEMIEKINRTSVSYFDKQQFGDLLGRFTSDVETVSNALQQSFLQVV
NAIFTLALVIGTVLYLNLQLGAVVVITIPISYFGARFIMSKSQPYFKQQADALGTLNGFVQENLTGFNVIKLFGREGRSL
DDFKEITEDLQKVGFKANFISGLMMPFLNGLSDLTYLIIAVLGGLQVLAGRLTIGNMQAFVQYVWQINQPIQNLTQLAGQ
LQSAKSSLDRIFQLMDEPDEANDATEVLEGDLTGQVIFNHVDFQYVADKPLIRDFNLEVNPGEMVAIVGPTGAGKSTIIN
LLMRFYDATAGSISVDGHDIRNLSRKDYRKQFGMVLQDAWLFEGTIKENLRFGNLEATDEEIVEAAKAANVDHFIRTLLG
GYNMEINQESSNISMGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKI
LVLKDGQIIEQGNHESLLADKGFYYDLYNSQFAEK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=419053 IBC04_RS02750 WP_180479620.1 520769..522556(+) (rcrQ) [Streptococcus thermophilus strain 24740]
ATGAAGGATAATAAAAAGAAAACAACTCATTCCTCAAGTTTTGGCCGCCTTTGGTCATACTTGCAGGTTTATCGTTTCCC
ACTTTACTTAGCTATTTTCCTGAAAATTATTAGTGTCATCATGAGTGTTATTGAGCCGGTGGTCATTGGTTTAGCCATTA
CGGAACTGACTAAAAATACACTGGACATCATTAAGGGGGTAGCAGGTGCTCATATCAACGTGTCCTACGTTGGTTTTGTT
TTGGTCTTTTACCTCTTGCGTGGTCTCATCTATGAGTTGGCTTCTTACTATTCCAACTATTTTATGACCAATGCCGTGCA
AGCAACGGTTCAGGATATGCGAAATGAAATGATTGAGAAAATCAATCGTACCTCAGTGTCATACTTTGATAAGCAACAAT
TTGGAGACCTTTTGGGTCGCTTTACTAGTGACGTCGAGACAGTTTCAAATGCCTTGCAGCAGTCATTCTTGCAGGTTGTC
AACGCCATCTTTACTCTAGCCTTGGTTATTGGGACAGTGCTTTACCTTAATCTTCAGTTGGGAGCTGTGGTTGTTATCAC
TATTCCGATTTCTTACTTTGGTGCTCGCTTCATTATGAGTAAGTCTCAACCTTACTTTAAGCAGCAGGCTGATGCCCTAG
GTACTCTTAACGGTTTTGTTCAGGAAAATCTGACTGGTTTCAATGTGATTAAACTTTTTGGACGTGAGGGTAGATCTTTA
GACGACTTTAAAGAAATTACGGAAGATCTTCAAAAGGTAGGTTTTAAGGCCAATTTCATTTCAGGCCTCATGATGCCTTT
CCTTAATGGTTTATCTGACTTGACCTATCTAATTATTGCCGTCCTAGGTGGTTTGCAAGTCTTGGCTGGTCGCTTGACGA
TTGGTAATATGCAGGCTTTCGTTCAGTACGTTTGGCAGATTAATCAACCTATTCAGAACTTGACTCAGTTGGCTGGACAA
TTGCAGAGTGCTAAATCTTCCTTGGACCGTATTTTCCAACTGATGGATGAACCAGACGAGGCTAATGATGCTACTGAGGT
GCTTGAAGGAGATTTAACTGGTCAAGTTATCTTTAATCATGTGGACTTCCAGTATGTAGCTGATAAACCTTTGATTCGTG
ACTTTAATCTTGAGGTTAATCCTGGTGAAATGGTGGCTATTGTCGGTCCTACCGGTGCTGGAAAATCAACTATTATCAAT
CTTCTCATGCGTTTCTATGATGCTACTGCAGGTTCTATCTCGGTTGATGGTCATGATATACGCAACTTGTCGCGTAAAGA
TTATCGTAAACAGTTTGGTATGGTGCTTCAGGATGCTTGGCTCTTTGAAGGAACTATCAAGGAAAATCTTCGTTTTGGTA
ATCTTGAGGCAACTGATGAAGAAATTGTTGAAGCAGCGAAGGCTGCCAATGTGGATCACTTTATCCGTACGCTGCTTGGT
GGCTACAACATGGAAATAAACCAGGAATCAAGTAACATTTCAATGGGACAAAAGCAACTTTTGACCATAGCCCGTGCACT
TTTGGCTGACCCTAAAATCTTGATTTTGGACGAGGCAACCTCATCAGTTGATACCCGTCTGGAACTCTTGATTCAAAAAG
CCATGAAGACACTTATGCAAGGTCGAACAAGTTTTGTCATCGCTCACCGTTTATCAACAATCCAAGAAGCAGACAAGATT
TTGGTCCTTAAAGATGGACAAATCATCGAACAAGGGAACCATGAATCCCTCCTTGCAGATAAAGGTTTCTATTACGATTT
GTATAATAGTCAATTTGCAGAGAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(373-521)

ABC transporter transmembrane region (ABC_membrane)

(29-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.353

100

0.424

Multiple sequence alignment