Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   IBC08_RS03855 Genome accession   NZ_CP061019
Coordinates   733763..735511 (+) Length   582 a.a.
NCBI ID   WP_179971515.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 24853     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 728763..740511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS03835 (IBC08_03810) glyA 729154..730404 (+) 1251 WP_011227085.1 serine hydroxymethyltransferase -
  IBC08_RS03840 (IBC08_03815) - 730411..731388 (+) 978 WP_002948476.1 nucleoid-associated protein -
  IBC08_RS03845 (IBC08_03820) - 731390..732001 (+) 612 WP_041827001.1 lysozyme family protein -
  IBC08_RS03850 (IBC08_03825) - 732034..733773 (+) 1740 WP_179970702.1 ABC transporter ATP-binding protein -
  IBC08_RS03855 (IBC08_03830) rcrQ 733763..735511 (+) 1749 WP_179971515.1 ABC transporter ATP-binding protein Regulator
  IBC08_RS03860 (IBC08_03835) - 735687..735818 (+) 132 WP_002885174.1 teichoic acid D-Ala incorporation-associated protein DltX -
  IBC08_RS03865 (IBC08_03840) dltA 735827..737377 (+) 1551 WP_022096817.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  IBC08_RS03870 (IBC08_03845) dltB 737374..738621 (+) 1248 WP_002950436.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  IBC08_RS03875 (IBC08_03850) dltC 738639..738878 (+) 240 WP_002950439.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  IBC08_RS03880 (IBC08_03855) dltD 738871..740139 (+) 1269 WP_179971298.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65908.56 Da        Isoelectric Point: 9.3100

>NTDB_id=418960 IBC08_RS03855 WP_179971515.1 733763..735511(+) (rcrQ) [Streptococcus thermophilus strain 24853]
MKARNNKSTLKRLCKDILSQRYLFALATVGTIVQVALTVYFPILLGDAVDAVLKMNAVFLMSRLIWQMLLLILANSAIQW
LNPLIYNRLIYSYSESLRERVMMKIHAIPFSYLDRQGTGDMVSRVTTDSDQLNNGLLMFFNQFFVGLLTIFVIIITMARL
DWFMMLLVLVMTPLSMLVTRFIARKSYQLYRNQTKWRGKQTQLIEESLTQEALVQILNAQDQMVRNFNEVNGKYANYSQG
AIFYSSAVNPATRFFNSLLYALITGVGAYRIMSGGTFTVGQLTTFLNYVTQYTKPFNDISSVLSELQSALACADRLYMIL
DEDEIPETGNAVLDEAEVQGHFQFNHVQFGYLQNKPLIKDLSIDIPAASTVAIVGPTGAGKSTLINLLMRFYDLDKGQIL
LDGRDITYYTRESLRKQIGMVLQETWLKVATIHDNIAYGNPKASREEVVAAAKAANADFFIKQLPLGYDTFLRDAGQSLS
QGQRQLLTIARIFVNVPKILILDEATSSIDTRTELLIQEAFAKLMKGRTSFIIAHRLSTIENADLILVMNNGDIVEYGTH
NQLMRTKGMYYRMQTAQKTQNN

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=418960 IBC08_RS03855 WP_179971515.1 733763..735511(+) (rcrQ) [Streptococcus thermophilus strain 24853]
ATGAAGGCTAGAAATAACAAGTCAACGCTTAAACGATTATGTAAAGATATCCTAAGTCAGCGTTACCTCTTTGCCTTAGC
AACTGTTGGGACCATTGTTCAAGTTGCTTTGACTGTTTACTTCCCTATTTTGCTTGGCGATGCAGTAGATGCTGTTCTTA
AGATGAATGCTGTCTTTTTGATGTCACGTTTGATTTGGCAGATGCTTTTGCTTATCTTAGCTAATAGTGCAATCCAGTGG
CTTAACCCTTTGATTTATAATCGATTGATTTATTCTTATAGCGAAAGTTTACGTGAACGAGTCATGATGAAAATTCATGC
TATTCCATTCAGTTATCTTGATCGCCAAGGAACTGGAGACATGGTTAGCCGCGTGACTACAGATAGTGACCAATTGAATA
ATGGTCTCCTTATGTTCTTTAATCAATTTTTCGTTGGACTTTTGACCATCTTTGTCATAATCATTACCATGGCTCGCTTA
GACTGGTTCATGATGCTCTTAGTTCTAGTGATGACACCTTTATCAATGCTTGTGACTCGTTTCATTGCTAGGAAGAGTTA
TCAACTCTATCGCAATCAAACCAAGTGGAGAGGCAAACAGACTCAGCTGATCGAAGAAAGTCTAACTCAGGAAGCTCTGG
TACAAATTCTAAATGCTCAAGACCAGATGGTTCGCAATTTTAATGAGGTTAATGGTAAGTATGCTAACTATTCACAGGGA
GCCATCTTTTACTCGTCAGCGGTTAACCCAGCTACACGTTTTTTTAATAGCTTGCTTTACGCTCTCATTACAGGTGTTGG
TGCCTATCGCATCATGTCGGGAGGCACATTTACAGTGGGACAATTGACTACCTTCCTAAACTATGTCACTCAGTATACCA
AACCTTTTAATGACATTTCATCTGTCCTATCTGAACTTCAAAGTGCTTTAGCCTGTGCTGATCGTCTATATATGATTTTA
GATGAAGATGAAATACCAGAAACGGGAAATGCGGTTTTGGACGAAGCAGAAGTTCAGGGACATTTTCAATTTAATCATGT
TCAATTTGGCTATTTGCAAAATAAACCTCTTATCAAGGATTTGAGTATTGATATTCCTGCTGCGAGTACCGTTGCTATTG
TTGGCCCAACAGGAGCAGGAAAATCTACTTTGATTAATCTTCTCATGCGTTTTTATGATTTGGATAAGGGTCAAATTTTG
CTAGACGGTCGAGATATTACGTATTATACCCGTGAGAGTCTTCGCAAGCAGATTGGGATGGTTCTACAAGAAACTTGGCT
TAAAGTAGCTACTATCCATGATAATATTGCCTATGGCAATCCAAAAGCTAGTCGAGAGGAAGTAGTTGCAGCAGCCAAAG
CAGCTAATGCTGATTTCTTTATTAAACAATTACCTCTAGGCTATGACACTTTCTTGAGAGATGCAGGGCAATCTCTTTCA
CAAGGTCAACGTCAGTTACTAACTATTGCTCGTATATTTGTCAATGTTCCTAAAATTCTTATTTTGGATGAAGCAACATC
AAGTATTGATACCCGTACGGAGCTCCTTATTCAAGAAGCTTTTGCTAAACTGATGAAAGGTCGGACGAGTTTCATTATTG
CTCATAGATTATCTACCATTGAGAATGCAGACCTTATTTTGGTAATGAATAATGGTGATATCGTTGAATATGGAACACAT
AATCAATTAATGAGGACTAAGGGAATGTACTATCGTATGCAGACAGCCCAAAAAACACAAAATAATTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(25-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.285

100

0.373