Detailed information NTG0418907

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: GWK28_RS09770
• Genome accession: NZ_CP047973
• Coordinates: 2055691..2056392 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain DETAB-P2
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2050691..2061392

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GWK28_RS09740 (GWK28_09755)	-	2050998..2051441 (-)	444	WP_001246675.1	SRPBCC family protein	-
GWK28_RS09745 (GWK28_09760)	tadA	2051511..2052014 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
GWK28_RS09750 (GWK28_09765)	-	2052021..2053145 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
GWK28_RS09755 (GWK28_09770)	ung	2053142..2053855 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
GWK28_RS09760 (GWK28_09775)	-	2053906..2054502 (-)	597	WP_004841359.1	6-carboxytetrahydropterin synthase	-
GWK28_RS09765 (GWK28_09780)	gspK	2054732..2055691 (-)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
GWK28_RS09770 (GWK28_09785)	xcpW	2055691..2056392 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
GWK28_RS09775 (GWK28_09790)	xcpV	2056392..2056772 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
GWK28_RS09780 (GWK28_09795)	-	2056762..2057316 (-)	555	WP_004841361.1	type II secretion system protein	-
GWK28_RS09785 (GWK28_09800)	-	2057326..2057934 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
GWK28_RS09790 (GWK28_09805)	-	2057972..2058745 (-)	774	WP_000497298.1	TatD family hydrolase	-
GWK28_RS09795 (GWK28_09810)	-	2058763..2059104 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
GWK28_RS09800 (GWK28_09815)	-	2059116..2060096 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
GWK28_RS09805 (GWK28_09820)	kdsB	2060108..2060869 (-)	762	WP_000680704.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=418907 GWK28_RS09770 WP_000594572.1 2055691..2056392(-) (xcpW) [Acinetobacter baumannii strain DETAB-P2]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=418907 GWK28_RS09770 WP_000594572.1 2055691..2056392(-) (xcpW) [Acinetobacter baumannii strain DETAB-P2]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGCAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991