Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   IAI02_RS00900 Genome accession   NZ_CP060748
Coordinates   208916..209680 (-) Length   254 a.a.
NCBI ID   WP_001136229.1    Uniprot ID   B7L5T2
Organism   Escherichia coli strain EC96     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 203916..214680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAI02_RS00890 (IAI02_00890) nikR 207706..208107 (-) 402 WP_187476032.1 nickel-responsive transcriptional regulator NikR -
  IAI02_RS00895 (IAI02_00895) nikE 208113..208919 (-) 807 WP_000173631.1 nickel import ATP-binding protein NikE -
  IAI02_RS00900 (IAI02_00900) amiE 208916..209680 (-) 765 WP_001136229.1 nickel import ATP-binding protein NikD Regulator
  IAI02_RS00905 (IAI02_00905) nikC 209680..210513 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  IAI02_RS00910 (IAI02_00910) nikB 210510..211454 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  IAI02_RS00915 (IAI02_00915) nikA 211454..212884 (-) 1431 Protein_186 nickel ABC transporter substrate-binding protein -
  IAI02_RS00920 (IAI02_00920) - 212938..213642 (-) 705 WP_001067858.1 IS6-like element IS26 family transposase -
  IAI02_RS00925 (IAI02_00925) yieF 213706..213963 (-) 258 Protein_188 class I chromate reductase YieF -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26820.38 Da        Isoelectric Point: 6.3761

>NTDB_id=416936 IAI02_RS00900 WP_001136229.1 208916..209680(-) (amiE) [Escherichia coli strain EC96]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=416936 IAI02_RS00900 WP_001136229.1 208916..209680(-) (amiE) [Escherichia coli strain EC96]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCTCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L5T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398