Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H7791_RS06915 Genome accession   NZ_CP060644
Coordinates   1400975..1401757 (-) Length   260 a.a.
NCBI ID   WP_021340905.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1309     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1395975..1406757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7791_RS06890 (H7791_06885) gatB 1396073..1397512 (-) 1440 WP_111694943.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  H7791_RS06895 (H7791_06890) gatA 1397512..1398978 (-) 1467 WP_111689485.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  H7791_RS06900 (H7791_06895) gatC 1398978..1399280 (-) 303 WP_012560907.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  H7791_RS08690 (H7791_06900) - 1399512..1399815 (-) 304 Protein_1316 putative PEP-binding protein -
  H7791_RS06910 (H7791_06905) - 1400274..1400828 (-) 555 WP_002988559.1 cysteine hydrolase family protein -
  H7791_RS06915 (H7791_06910) codY 1400975..1401757 (-) 783 WP_021340905.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H7791_RS06920 (H7791_06915) - 1401975..1403189 (-) 1215 WP_011184883.1 pyridoxal phosphate-dependent aminotransferase -
  H7791_RS06925 (H7791_06920) - 1403420..1403872 (+) 453 WP_002992571.1 universal stress protein -
  H7791_RS06930 (H7791_06925) - 1403995..1405383 (-) 1389 WP_009881044.1 Cof-type HAD-IIB family hydrolase -
  H7791_RS06935 (H7791_06930) - 1405455..1406420 (+) 966 WP_002983258.1 asparaginase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28647.79 Da        Isoelectric Point: 4.5611

>NTDB_id=416100 H7791_RS06915 WP_021340905.1 1400975..1401757(-) (codY) [Streptococcus pyogenes strain TSPY1309]
MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVENELTIFPVESKDTYPGGLTTIAPIYGGGMRLGSLIIWRNDNEFSDDDLILVEISSTVVGIQLLN
LQTENLEDTIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASIIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFAKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=416100 H7791_RS06915 WP_021340905.1 1400975..1401757(-) (codY) [Streptococcus pyogenes strain TSPY1309]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATCACATCTATTTTGCAGCGTTCCGTAGATAGCCTAGAAACAGAATTACC
GTATAACACAATGGCATCTCGCCTAGCAGATATCATTGACTGCAATGCTTGTATTATCAATGGCGGCGGCACATTGCTTG
GTTATGCCATGAAATATAAAACTAACACTGATCGTGTTGAGGAATTTTTTGAAGCTAAACAATTTCCAGATACTTATGTA
AAGGCTGCTAGCCGAGTTTACGATACAGAAGCTAACCTTTCTGTCGAAAATGAGTTGACTATATTCCCTGTTGAGTCTAA
AGACACTTATCCAGGAGGTCTAACGACTATTGCGCCGATTTATGGTGGAGGGATGCGCCTTGGATCACTCATTATCTGGC
GTAATGACAATGAGTTTAGTGATGATGATTTGATTTTGGTTGAGATCTCAAGTACTGTTGTGGGGATTCAATTATTAAAT
CTTCAGACAGAAAACTTAGAAGACACCATCCGTAAACAAACAGCGGTCAACATGGCAATTAATACGCTTTCTTATTCAGA
AATGAAAGCTGTTGCAGCAATTCTTGGAGAGTTAGATGGTAACGAAGGACGATTGACAGCTTCTATTATTGCTGATCGTA
TTGGTATTACCCGTTCTGTTATTGTCAATGCTCTGCGTAAATTAGAAAGTGCAGGGATTATTGAAAGTCGTTCTCTTGGT
ATGAAAGGGACATACCTCAAAGTTATCAACGAAGGTATTTTTGCTAAATTAAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.759

98.846

0.65
  codY Bacillus subtilis subsp. subtilis str. 168

51.373

98.077

0.504