Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   H7797_RS08990 Genome accession   NZ_CP060639
Coordinates   1788425..1789693 (+) Length   422 a.a.
NCBI ID   WP_111693427.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY153     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1783425..1794693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7797_RS08965 (H7797_08945) - 1783592..1784341 (-) 750 WP_111693423.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  H7797_RS08970 (H7797_08950) prmA 1784341..1785294 (-) 954 WP_111693424.1 50S ribosomal protein L11 methyltransferase -
  H7797_RS08975 (H7797_08955) - 1785365..1785835 (-) 471 WP_002987990.1 DUF3013 family protein -
  H7797_RS08980 (H7797_08960) pabB 1786036..1787793 (+) 1758 WP_111693425.1 aminodeoxychorismate synthase component I -
  H7797_RS08985 (H7797_08965) - 1787826..1788392 (+) 567 WP_111693426.1 aminodeoxychorismate/anthranilate synthase component II -
  H7797_RS08990 (H7797_08970) rarA 1788425..1789693 (+) 1269 WP_111693427.1 replication-associated recombination protein A Machinery gene
  H7797_RS09005 (H7797_08985) - 1790191..1790631 (+) 441 WP_011018265.1 GNAT family N-acetyltransferase -
  H7797_RS09010 (H7797_08990) - 1790686..1791192 (+) 507 WP_023079287.1 DNA topology modulation protein -
  H7797_RS09015 (H7797_08995) - 1791441..1792133 (+) 693 WP_111693428.1 exotoxin beta-grasp domain-containing protein -
  H7797_RS09850 - 1792550..1792684 (-) 135 WP_258850879.1 hypothetical protein -
  H7797_RS09020 (H7797_09000) - 1792863..1794491 (+) 1629 WP_010922707.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46645.07 Da        Isoelectric Point: 6.3774

>NTDB_id=415636 H7797_RS08990 WP_111693427.1 1788425..1789693(+) (rarA) [Streptococcus pyogenes strain TSPY153]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEITEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=415636 H7797_RS08990 WP_111693427.1 1788425..1789693(+) (rarA) [Streptococcus pyogenes strain TSPY153]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTACGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGATAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTCTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCCAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59