Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   H7798_RS08395 Genome accession   NZ_CP060638
Coordinates   1699422..1700690 (+) Length   422 a.a.
NCBI ID   WP_032459942.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1694422..1705690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7798_RS08370 (H7798_08410) - 1694590..1695339 (-) 750 WP_030126237.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  H7798_RS08375 (H7798_08415) prmA 1695339..1696292 (-) 954 WP_030126236.1 50S ribosomal protein L11 methyltransferase -
  H7798_RS08380 (H7798_08420) - 1696363..1696833 (-) 471 WP_002982553.1 DUF3013 family protein -
  H7798_RS08385 (H7798_08425) pabB 1697033..1698790 (+) 1758 WP_111689681.1 aminodeoxychorismate synthase component I -
  H7798_RS08390 (H7798_08430) - 1698823..1699389 (+) 567 WP_032459941.1 aminodeoxychorismate/anthranilate synthase component II -
  H7798_RS08395 (H7798_08435) rarA 1699422..1700690 (+) 1269 WP_032459942.1 replication-associated recombination protein A Machinery gene
  H7798_RS08410 (H7798_08450) - 1701262..1701976 (+) 715 Protein_1626 exotoxin beta-grasp domain-containing protein -
  H7798_RS09230 - 1702393..1702527 (-) 135 WP_011018269.1 hypothetical protein -
  H7798_RS08415 (H7798_08455) - 1702705..1704333 (+) 1629 WP_010922707.1 ABC transporter substrate-binding protein -
  H7798_RS08420 (H7798_08460) - 1704446..1705423 (+) 978 WP_111689683.1 ABC transporter permease -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46619.03 Da        Isoelectric Point: 6.3774

>NTDB_id=415541 H7798_RS08395 WP_032459942.1 1699422..1700690(+) (rarA) [Streptococcus pyogenes strain TSPY141]
MADHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=415541 H7798_RS08395 WP_032459942.1 1699422..1700690(+) (rarA) [Streptococcus pyogenes strain TSPY141]
ATGGCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGAACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAACGGCACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATAGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGATGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCAAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGTAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59