Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   HUG14_RS00430 Genome accession   NZ_CP060580
Coordinates   89459..91777 (-) Length   772 a.a.
NCBI ID   WP_316246997.1    Uniprot ID   -
Organism   Lactococcus lactis strain K_LL005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 84459..96777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG14_RS00400 (HUG14_00400) - 85066..86034 (-) 969 WP_058220563.1 LacI family DNA-binding transcriptional regulator -
  HUG14_RS00405 (HUG14_00405) purB 86168..87463 (-) 1296 WP_109991100.1 adenylosuccinate lyase -
  HUG14_RS00410 (HUG14_00410) aroD 87660..88340 (-) 681 WP_187398439.1 type I 3-dehydroquinate dehydratase -
  HUG14_RS00420 (HUG14_00420) - 88603..88806 (-) 204 WP_010906074.1 DUF2969 domain-containing protein -
  HUG14_RS00425 (HUG14_00425) trxA 89048..89362 (-) 315 WP_003129442.1 thioredoxin -
  HUG14_RS00430 (HUG14_00430) mutS/mutS2 89459..91777 (-) 2319 WP_316246997.1 endonuclease MutS2 Machinery gene
  HUG14_RS00435 (HUG14_00435) - 91833..92393 (-) 561 WP_003129445.1 CvpA family protein -
  HUG14_RS00440 (HUG14_00440) - 92553..93518 (-) 966 WP_003129446.1 NAD(P)/FAD-dependent oxidoreductase -
  HUG14_RS00445 (HUG14_00445) ccpA 93657..94655 (-) 999 WP_003129447.1 catabolite control protein A Regulator
  HUG14_RS00450 (HUG14_00450) - 94870..95958 (+) 1089 WP_187398440.1 Xaa-Pro peptidase family protein -

Sequence

Protein


Download         Length: 772 a.a.        Molecular weight: 86686.45 Da        Isoelectric Point: 6.5277

>NTDB_id=415289 HUG14_RS00430 WP_316246997.1 89459..91777(-) (mutS/mutS2) [Lactococcus lactis strain K_LL005]
MLQILEYDKVKEQFMNALTTAQGQQELKDLKPLTDKEKIQLLFDEVADFRLLTQENGLLNLGKTNDLTEILRRLELEASL
SGKEFVEIKKVIQLGINIQRFFDEAENVETPSLAITLEKLVDLSALVKKLEIFDNAGSLYDNASLELMHIRASIKSHQSE
IRKIMQEMLTKNLSSLSEKVITIRNDRQVLPVKAENKNKIAGVVHDMSASGQTLYIEPNAVVSLNNKLNQKRIEERQEIT
RIYRELASQLKPYSFDIRQNAWLIGHIDFVRAKYLYLSANKATLPELTTDKDITLFAARHPLIEAKIVVANDIKFDAGLN
TIVITGPNTGGKTITLKTVGLLTILAQSGLPILAADGSRIHLFDDIFADIGDEQSIEQSLSTFSSHMTNIVHILAQADEN
SLVLFDELGAGTDPKEGAALAIAILENLGERNVKTMASTHYPELKAYGVETQQVINASMEFNIDKMQPTYHLQLGVPGRS
NALEISRRLGLPETIISVASQQISDSEHDVNQMIEKLEEKTREVIESSRNIKKIERENQSLHKDLTKVYNQINREREFEL
EKAQKEAQEVVKKASLEAQEILKNLNDKAALKPHEIIAARKELEGLAPTIDFSKNKVLKKAKAQRGLKQGAEVNVTSYGQ
RGKLIRLEKDGRWTVQMGSITTRLNEDEFEVIESPEEIQAKTKNVSKKVTSKVKAQLDLRGMRYEEAELELDNYIDQALL
ANLIQITIVHGIGTGVIREMVQKKLQKHRHIKSYEYAPINAGGSGATIAILK

Nucleotide


Download         Length: 2319 bp        

>NTDB_id=415289 HUG14_RS00430 WP_316246997.1 89459..91777(-) (mutS/mutS2) [Lactococcus lactis strain K_LL005]
ATTCTCCAAATATTGGAATATGATAAAGTCAAAGAACAGTTCATGAATGCTTTGACGACAGCGCAGGGTCAACAAGAATT
AAAAGATTTAAAACCTTTGACAGATAAGGAAAAAATTCAGCTCCTTTTTGATGAAGTTGCTGATTTTCGCTTATTGACCC
AAGAAAATGGCCTATTAAATTTAGGAAAAACAAATGATTTAACAGAAATACTCAGACGTCTAGAGCTTGAAGCCAGTCTT
TCAGGCAAGGAATTCGTTGAAATAAAAAAAGTGATTCAATTAGGAATTAATATTCAACGCTTTTTTGATGAAGCTGAAAA
TGTTGAAACACCTTCACTAGCTATTACTTTGGAAAAATTGGTTGATTTATCAGCATTAGTCAAAAAATTAGAAATTTTTG
ATAATGCGGGAAGTCTTTATGATAATGCCAGTCTCGAATTGATGCATATCCGTGCTTCAATCAAGAGTCATCAATCAGAA
ATTCGGAAAATCATGCAGGAAATGCTGACCAAAAATCTCTCATCTTTGAGTGAAAAAGTCATCACTATCCGAAATGACCG
ACAAGTGCTTCCTGTAAAAGCAGAAAACAAAAATAAAATTGCTGGTGTAGTTCATGATATGTCTGCTTCAGGTCAAACGC
TTTATATTGAACCAAATGCGGTTGTTTCATTAAATAATAAACTTAATCAAAAGAGAATTGAAGAACGCCAAGAAATCACA
AGAATTTATCGTGAGCTTGCTAGTCAATTAAAACCTTATAGCTTTGATATAAGACAAAATGCTTGGCTGATTGGTCATAT
TGATTTTGTTCGTGCCAAGTATCTTTATTTATCAGCGAATAAAGCGACACTCCCAGAATTAACAACCGATAAAGATATTA
CCCTTTTTGCAGCTCGCCATCCTTTGATTGAAGCAAAAATAGTTGTGGCAAATGATATTAAATTTGATGCAGGGCTCAAT
ACGATTGTTATTACCGGTCCAAATACGGGTGGGAAGACCATTACTTTGAAAACAGTTGGTTTGTTGACAATATTGGCTCA
ATCAGGTCTGCCAATTTTAGCCGCTGATGGCAGTCGAATTCATCTTTTTGATGATATTTTTGCCGATATCGGTGATGAGC
AATCCATTGAGCAAAGTTTATCAACTTTCTCAAGTCATATGACTAATATTGTTCATATTTTAGCTCAAGCAGATGAAAAT
AGTTTGGTCTTGTTTGATGAACTTGGGGCAGGAACTGATCCAAAAGAAGGAGCGGCTCTTGCTATTGCCATACTGGAAAA
TTTAGGTGAACGAAATGTTAAAACCATGGCAAGTACTCATTATCCTGAGTTAAAAGCTTATGGGGTCGAAACGCAACAAG
TAATCAATGCAAGTATGGAATTTAACATTGATAAAATGCAACCCACTTATCATTTGCAACTGGGAGTGCCTGGACGTTCA
AATGCCCTGGAAATTTCGAGAAGATTAGGTTTGCCAGAAACCATTATTTCAGTAGCCAGTCAACAAATTTCTGACAGTGA
GCATGATGTCAATCAGATGATTGAAAAGTTGGAAGAAAAAACGCGTGAAGTGATTGAAAGTTCAAGAAATATTAAAAAAA
TTGAACGAGAAAATCAAAGTTTACATAAAGATTTGACGAAAGTCTATAATCAAATTAATCGCGAGCGCGAGTTTGAATTA
GAAAAAGCACAAAAAGAAGCTCAAGAAGTAGTTAAAAAAGCGAGTCTTGAAGCGCAAGAAATTTTGAAGAATCTCAATGA
TAAAGCAGCCTTGAAACCACATGAAATTATTGCTGCTAGAAAAGAACTTGAAGGTTTGGCTCCAACCATTGATTTTTCTA
AAAATAAGGTTTTGAAAAAAGCGAAAGCACAAAGAGGACTTAAGCAAGGGGCTGAAGTTAATGTCACTTCTTATGGTCAG
CGTGGTAAATTGATTCGTTTAGAAAAAGATGGACGTTGGACGGTTCAAATGGGTTCAATCACGACTCGTTTAAATGAAGA
TGAATTTGAAGTGATTGAAAGTCCAGAAGAAATTCAAGCCAAAACTAAAAATGTCAGCAAGAAGGTGACTTCTAAAGTCA
AAGCTCAACTTGATTTACGCGGGATGCGTTATGAAGAAGCAGAACTGGAATTGGATAATTATATTGACCAAGCTCTACTT
GCAAATTTGATTCAAATTACGATTGTTCATGGGATTGGAACGGGTGTTATTCGAGAAATGGTACAGAAAAAACTTCAAAA
ACACCGTCATATTAAATCTTATGAATATGCACCAATTAATGCTGGTGGCTCTGGAGCAACGATTGCTATTTTGAAGTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(630-668)

MutS domain V (MutS_V)

(322-504)

Smr domain (Smr)

(697-772)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

42.711

100

0.433