Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H4B46_RS07295 Genome accession   NZ_CP060504
Coordinates   1554726..1555367 (+) Length   213 a.a.
NCBI ID   WP_000201225.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AbCTX9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1549726..1560367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4B46_RS07275 (H4B46_07260) - 1549774..1550106 (+) 333 WP_000169604.1 hypothetical protein -
  H4B46_RS07280 (H4B46_07265) - 1550109..1550933 (+) 825 WP_086223954.1 putative RNA methyltransferase -
  H4B46_RS07285 (H4B46_07270) ponA 1550951..1553506 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  H4B46_RS07290 (H4B46_07275) pilM 1553668..1554726 (+) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  H4B46_RS07295 (H4B46_07280) pilN 1554726..1555367 (+) 642 WP_000201225.1 PilN domain-containing protein Machinery gene
  H4B46_RS07300 (H4B46_07285) pilO 1555364..1556104 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  H4B46_RS07305 (H4B46_07290) pilP 1556115..1556642 (+) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  H4B46_RS07310 (H4B46_07295) pilQ 1556705..1558870 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  H4B46_RS07315 (H4B46_07300) aroK 1558882..1559451 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=415244 H4B46_RS07295 WP_000201225.1 1554726..1555367(+) (pilN) [Acinetobacter baumannii strain AbCTX9]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFAIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=415244 H4B46_RS07295 WP_000201225.1 1554726..1555367(+) (pilN) [Acinetobacter baumannii strain AbCTX9]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTGCGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN/pilN Acinetobacter baylyi ADP1

71.429

98.592

0.704