Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   H8N04_RS06330 Genome accession   NZ_CP060491
Coordinates   1238392..1239666 (-) Length   424 a.a.
NCBI ID   WP_000102735.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WH39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1233392..1244666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8N04_RS06305 (H8N04_06310) hisS 1233953..1235215 (+) 1263 WP_000590826.1 histidine--tRNA ligase -
  H8N04_RS06310 (H8N04_06315) aspS 1235231..1236997 (+) 1767 WP_000044800.1 aspartate--tRNA ligase -
  H8N04_RS06320 (H8N04_06325) - 1237330..1237458 (+) 129 WP_001790559.1 hypothetical protein -
  H8N04_RS06325 (H8N04_06330) - 1237458..1238231 (+) 774 WP_000682646.1 ThiF family adenylyltransferase -
  H8N04_RS06330 (H8N04_06335) rarA 1238392..1239666 (-) 1275 WP_000102735.1 replication-associated recombination protein A Machinery gene
  H8N04_RS06335 (H8N04_06340) cymR 1239751..1240173 (+) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  H8N04_RS06340 (H8N04_06345) - 1240273..1240395 (+) 123 Protein_1206 CsbD family protein -
  H8N04_RS06345 (H8N04_06350) - 1240495..1240641 (+) 147 WP_000009238.1 SAS049 family protein -
  H8N04_RS06350 (H8N04_06355) - 1240878..1241891 (-) 1014 WP_000985886.1 LLM class flavin-dependent oxidoreductase -
  H8N04_RS06355 (H8N04_06360) - 1242203..1243345 (+) 1143 WP_000409167.1 cysteine desulfurase family protein -
  H8N04_RS06360 (H8N04_06365) mnmA 1243346..1244464 (+) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47250.81 Da        Isoelectric Point: 8.3539

>NTDB_id=415156 H8N04_RS06330 WP_000102735.1 1238392..1239666(-) (rarA) [Staphylococcus aureus strain WH39]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=415156 H8N04_RS06330 WP_000102735.1 1238392..1239666(-) (rarA) [Staphylococcus aureus strain WH39]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGCCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGACAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAC
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684