Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   H8S71_RS08055 Genome accession   NZ_CP060417
Coordinates   1539391..1539840 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1534391..1544840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS08015 (H8S71_08010) ctaE 1534408..1535031 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  H8S71_RS08020 (H8S71_08015) ctaF 1535034..1535366 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  H8S71_RS08025 (H8S71_08020) ctaG 1535394..1536287 (+) 894 WP_169037488.1 cytochrome c oxidase assembly factor CtaG -
  H8S71_RS08030 (H8S71_08025) ylbA 1536319..1536681 (-) 363 WP_003232238.1 YugN family protein -
  H8S71_RS08035 (H8S71_08030) ylbB 1536821..1537267 (+) 447 WP_003221362.1 CBS domain-containing protein -
  H8S71_RS08040 (H8S71_08035) ylbC 1537351..1538391 (+) 1041 WP_182094158.1 CAP domain-containing protein -
  H8S71_RS08045 (H8S71_08040) ylbD 1538622..1539020 (+) 399 WP_032725642.1 YlbD family protein -
  H8S71_RS08050 (H8S71_08045) ylbE 1539036..1539275 (+) 240 WP_003232231.1 YlbE-like family protein -
  H8S71_RS08055 (H8S71_08050) ylbF 1539391..1539840 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  H8S71_RS08060 (H8S71_08055) ylbG 1539895..1540167 (+) 273 WP_009967171.1 YlbG family protein -
  H8S71_RS08065 (H8S71_08060) rsmD 1540490..1541044 (+) 555 WP_070548911.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H8S71_RS08070 (H8S71_08065) coaD 1541049..1541534 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  H8S71_RS08075 (H8S71_08070) spoVV 1541545..1542771 (-) 1227 WP_169037490.1 dipicolinic acid transporter SpoVV -
  H8S71_RS08080 (H8S71_08075) ylbK 1542949..1543731 (+) 783 WP_021479345.1 patatin family protein -
  H8S71_RS08085 (H8S71_08080) sepM 1543733..1544758 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=415036 H8S71_RS08055 WP_003221370.1 1539391..1539840(+) (ylbF) [Bacillus subtilis subsp. subtilis strain ONU 559]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=415036 H8S71_RS08055 WP_003221370.1 1539391..1539840(+) (ylbF) [Bacillus subtilis subsp. subtilis strain ONU 559]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment