Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   H8S71_RS06100 Genome accession   NZ_CP060417
Coordinates   1187180..1188097 (+) Length   305 a.a.
NCBI ID   WP_187002182.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182180..1193097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS06085 (H8S71_06080) trpS 1182761..1183753 (-) 993 WP_169037421.1 tryptophan--tRNA ligase -
  H8S71_RS06090 (H8S71_06085) oppA 1184497..1186134 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  H8S71_RS06095 (H8S71_06090) oppB 1186241..1187176 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  H8S71_RS06100 (H8S71_06095) amiD 1187180..1188097 (+) 918 WP_187002182.1 oligopeptide ABC transporter permease OppC Regulator
  H8S71_RS06105 (H8S71_06100) oppD 1188102..1189178 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  H8S71_RS06110 (H8S71_06105) oppF 1189180..1190097 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  H8S71_RS06115 (H8S71_06110) yjbB 1190204..1191421 (+) 1218 WP_072175656.1 MFS transporter -
  H8S71_RS06120 (H8S71_06115) yjbC 1191585..1192163 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  H8S71_RS06125 (H8S71_06120) spx 1192344..1192739 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33653.18 Da        Isoelectric Point: 10.2873

>NTDB_id=415020 H8S71_RS06100 WP_187002182.1 1187180..1188097(+) (amiD) [Bacillus subtilis subsp. subtilis strain ONU 559]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIMLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=415020 H8S71_RS06100 WP_187002182.1 1187180..1188097(+) (amiD) [Bacillus subtilis subsp. subtilis strain ONU 559]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCATGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment