Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GQ601_RS12685 Genome accession   NZ_CP047646
Coordinates   2627325..2628011 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 19/Msa0875     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2622325..2633011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ601_RS12650 (GQ601_12710) yqeH 2622852..2623952 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  GQ601_RS12655 (GQ601_12715) aroE 2623966..2624772 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  GQ601_RS12660 (GQ601_12720) yhbY 2624776..2625066 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  GQ601_RS12665 (GQ601_12725) nadD 2625069..2625638 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  GQ601_RS12670 (GQ601_12730) yqeK 2625628..2626212 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  GQ601_RS12675 (GQ601_12735) rsfS 2626213..2626566 (+) 354 WP_001088020.1 ribosome silencing factor -
  GQ601_RS12680 (GQ601_12740) - 2626569..2627285 (+) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  GQ601_RS12685 (GQ601_12745) comEA 2627325..2628011 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  GQ601_RS12690 (GQ601_12750) - 2628103..2628564 (+) 462 WP_000439690.1 ComE operon protein 2 -
  GQ601_RS12695 (GQ601_12755) comEC 2628569..2630770 (+) 2202 WP_212593114.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GQ601_RS12700 (GQ601_12760) holA 2630827..2631801 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  GQ601_RS12705 (GQ601_12765) rpsT 2631846..2632097 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=414947 GQ601_RS12685 WP_001825349.1 2627325..2628011(+) (comEA) [Staphylococcus aureus strain 19/Msa0875]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=414947 GQ601_RS12685 WP_001825349.1 2627325..2628011(+) (comEA) [Staphylococcus aureus strain 19/Msa0875]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment