Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GNE05_RS08540 Genome accession   NZ_CP047644
Coordinates   1687878..1688657 (+) Length   259 a.a.
NCBI ID   WP_160182664.1    Uniprot ID   -
Organism   Bacillus sp. AM1(2019)     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1682878..1693657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNE05_RS08520 (GNE05_08520) trmFO 1683565..1684872 (+) 1308 WP_160182662.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GNE05_RS08525 (GNE05_08525) xerC 1684942..1685859 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  GNE05_RS08530 (GNE05_08530) hslV 1685875..1686420 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  GNE05_RS08535 (GNE05_08535) hslU 1686428..1687840 (+) 1413 WP_266023146.1 HslU--HslV peptidase ATPase subunit -
  GNE05_RS08540 (GNE05_08540) codY 1687878..1688657 (+) 780 WP_160182664.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GNE05_RS08545 (GNE05_08545) flgB 1689011..1689400 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  GNE05_RS08550 (GNE05_08550) flgC 1689400..1689852 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  GNE05_RS08555 (GNE05_08555) fliE 1689863..1690183 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  GNE05_RS08560 (GNE05_08560) fliF 1690226..1691836 (+) 1611 WP_160182665.1 flagellar basal-body MS-ring/collar protein FliF -
  GNE05_RS08565 (GNE05_08565) fliG 1691849..1692865 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  GNE05_RS08570 (GNE05_08570) fliH 1692858..1693613 (+) 756 WP_017417778.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29098.32 Da        Isoelectric Point: 4.6062

>NTDB_id=414869 GNE05_RS08540 WP_160182664.1 1687878..1688657(+) (codY) [Bacillus sp. AM1(2019)]
MVLLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENERMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=414869 GNE05_RS08540 WP_160182664.1 1687878..1688657(+) (codY) [Bacillus sp. AM1(2019)]
ATGGTTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGAACGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATCCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACA
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

98.456

100

0.985
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467

Multiple sequence alignment