Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   GU333_RS09455 Genome accession   NZ_CP047630
Coordinates   1923661..1924596 (-) Length   311 a.a.
NCBI ID   WP_167842388.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain Lr_18_12S     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1918661..1929596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU333_RS09435 (GU333_09400) - 1919451..1920401 (+) 951 WP_167838214.1 IS30 family transposase -
  GU333_RS09440 (GU333_09405) frr 1920612..1921169 (-) 558 WP_061774678.1 ribosome recycling factor -
  GU333_RS09445 (GU333_09410) pyrH 1921200..1921919 (-) 720 WP_061774677.1 UMP kinase -
  GU333_RS09450 (GU333_09415) - 1922159..1923352 (-) 1194 WP_167842387.1 acetate kinase -
  GU333_RS09455 (GU333_09420) comYH 1923661..1924596 (-) 936 WP_167842388.1 class I SAM-dependent methyltransferase Machinery gene
  GU333_RS09460 (GU333_09425) - 1924758..1925246 (-) 489 WP_061774674.1 GNAT family N-acetyltransferase -
  GU333_RS09465 (GU333_09430) murC 1925347..1926681 (-) 1335 WP_138492113.1 UDP-N-acetylmuramate--L-alanine ligase -
  GU333_RS09470 (GU333_09435) - 1926950..1927561 (-) 612 WP_167842389.1 hypothetical protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34679.67 Da        Isoelectric Point: 4.4804

>NTDB_id=414749 GU333_RS09455 WP_167842388.1 1923661..1924596(-) (comYH) [Lactococcus raffinolactis strain Lr_18_12S]
MNMEKIETAFGLLLANVQQLETRLATHFYDALIEQNVSYLGKAVSEDLQQRNEQLRALNLTKQEWQKVYQFALIKGAKDM
HLQANHQLTPDAIGYIINFMIETLSTETNLSILELGSGTGNLAETLLTSMSDKALTYTGFEVDDLMIDLSASIADIMQTS
AQFLQIDAVRPQVIEPVDLLLSDLPVGYYPDDAIAQRSVVGSQSEHTYAHHLLMAQGFKYLKADGYAIFIAPSDLLSSPQ
SDLLKKWLQDYASVAAVITLPEDIVTENHTKAIFVLQKSAQGKAPFVFPLISLTNPEIVQSFMTQFRQNMI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=414749 GU333_RS09455 WP_167842388.1 1923661..1924596(-) (comYH) [Lactococcus raffinolactis strain Lr_18_12S]
ATGAATATGGAAAAAATTGAAACGGCATTTGGCCTATTATTAGCCAACGTTCAGCAACTTGAAACACGCTTGGCAACACA
TTTTTACGATGCCTTGATTGAGCAAAATGTGAGCTATCTCGGTAAAGCTGTATCAGAAGACTTGCAGCAACGCAATGAGC
AGTTGCGTGCGCTCAATTTGACAAAACAAGAGTGGCAAAAGGTCTATCAGTTTGCCTTGATTAAGGGTGCTAAGGACATG
CACCTGCAAGCCAATCATCAGTTAACACCGGATGCAATTGGGTATATCATCAATTTCATGATTGAGACCTTATCTACCGA
AACTAACTTGTCTATTTTGGAATTAGGGTCTGGGACAGGTAATTTAGCCGAGACATTATTGACTAGCATGTCAGATAAAG
CACTAACCTATACTGGCTTTGAAGTTGATGATTTAATGATTGACCTGTCGGCTAGCATTGCCGATATCATGCAAACTTCA
GCCCAATTTTTGCAGATTGATGCTGTGCGCCCTCAGGTTATCGAACCTGTGGATCTGTTATTGTCAGATTTACCGGTAGG
CTATTATCCAGATGATGCGATTGCGCAACGTTCAGTTGTTGGCAGTCAGAGTGAGCATACCTACGCCCATCACTTGCTGA
TGGCGCAAGGATTCAAATATCTAAAAGCAGATGGTTATGCGATTTTTATTGCACCGAGTGATTTGTTGTCTAGTCCGCAA
TCCGATTTATTAAAAAAATGGTTGCAGGATTATGCCAGCGTCGCTGCTGTGATTACTTTACCAGAAGACATTGTCACTGA
AAATCATACTAAGGCAATCTTTGTTTTACAAAAGTCTGCACAAGGTAAAGCACCCTTTGTTTTTCCTTTGATAAGTCTAA
CCAATCCTGAAATTGTGCAGTCTTTCATGACGCAATTTCGTCAGAATATGATATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

54.341

100

0.543
  comYH Streptococcus mutans UA140

54.341

100

0.543

Multiple sequence alignment