Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   GU334_RS09475 Genome accession   NZ_CP047628
Coordinates   1956249..1957184 (-) Length   311 a.a.
NCBI ID   WP_167841539.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain Lr_19_14     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1951249..1962184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU334_RS09455 (GU334_09415) - 1951986..1952936 (+) 951 WP_068164079.1 IS30 family transposase -
  GU334_RS09460 (GU334_09420) frr 1953200..1953757 (-) 558 WP_061774678.1 ribosome recycling factor -
  GU334_RS09465 (GU334_09425) pyrH 1953788..1954507 (-) 720 WP_167841538.1 UMP kinase -
  GU334_RS09470 (GU334_09430) - 1954747..1955940 (-) 1194 WP_096039558.1 acetate kinase -
  GU334_RS09475 (GU334_09435) comYH 1956249..1957184 (-) 936 WP_167841539.1 class I SAM-dependent methyltransferase Machinery gene
  GU334_RS09480 (GU334_09440) - 1957346..1957834 (-) 489 WP_167841540.1 GNAT family N-acetyltransferase -
  GU334_RS09485 (GU334_09445) murC 1957945..1959279 (-) 1335 WP_138492113.1 UDP-N-acetylmuramate--L-alanine ligase -
  GU334_RS09490 (GU334_09450) - 1959548..1960159 (-) 612 WP_138492112.1 hypothetical protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34695.67 Da        Isoelectric Point: 4.4804

>NTDB_id=414704 GU334_RS09475 WP_167841539.1 1956249..1957184(-) (comYH) [Lactococcus raffinolactis strain Lr_19_14]
MNMEKIETTFGLLLANVQQLETRLATHFYDALIEQNVSYLGKAVSEDLQQRNEQLRALNLTKQEWQKVYQFALIKGAKDM
HLQANHQLTPDAIGYIINFMIETLSTETNLSILELGSGTGNLAETLLTSMSDKALTYTGFEVDDLMIDLSASIADVMQTS
AQFLQIDAVRPQVIEPVDLLLSDLPVGYYPDDAIAQRSVVGSQSEHTYAHHLLMAQGFKYLKADGYAIFIAPSDLLSSPQ
SDLLKKWLQDYASVAAVITLPEDIVTENHTKAIFVLQKSAQGKAPFVFPLISLTNPEIVQSFMTQFRQNMI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=414704 GU334_RS09475 WP_167841539.1 1956249..1957184(-) (comYH) [Lactococcus raffinolactis strain Lr_19_14]
ATGAATATGGAAAAAATAGAAACGACATTTGGCCTATTATTAGCCAACGTTCAGCAACTTGAAACACGCTTGGCAACACA
TTTTTACGATGCCTTGATTGAGCAAAATGTGAGCTATCTCGGTAAAGCTGTATCAGAAGACTTGCAGCAACGCAATGAGC
AGTTGCGTGCGCTCAATTTGACAAAACAAGAGTGGCAAAAGGTCTATCAGTTTGCCTTGATTAAGGGTGCTAAGGACATG
CACCTGCAAGCCAATCATCAGTTAACACCGGATGCAATTGGGTATATCATCAATTTCATGATTGAGACCTTATCTACCGA
AACTAACTTGTCTATTTTGGAATTAGGGTCTGGGACAGGTAATTTAGCCGAGACATTATTGACTAGCATGTCAGATAAAG
CACTAACCTATACTGGCTTTGAAGTTGATGATTTAATGATTGACCTGTCGGCTAGCATTGCCGATGTCATGCAAACTTCA
GCCCAATTTTTGCAGATTGATGCTGTGCGCCCTCAGGTTATCGAACCTGTGGATCTGTTATTGTCAGATTTACCGGTAGG
CTATTATCCAGATGATGCGATTGCGCAACGTTCAGTTGTTGGCAGTCAGAGTGAGCATACCTACGCCCATCACTTGCTGA
TGGCGCAAGGATTCAAATATCTAAAAGCAGATGGTTATGCGATTTTTATTGCACCGAGTGATTTGTTGTCTAGTCCGCAA
TCCGATTTATTAAAAAAATGGTTGCAGGATTATGCCAGCGTCGCTGCTGTGATTACTTTACCAGAAGACATTGTCACTGA
AAATCATACTAAGGCAATCTTTGTTTTACAAAAGTCTGCACAAGGTAAAGCACCCTTTGTTTTTCCTTTGATAAGTCTAA
CCAATCCTGAAATTGTGCAGTCTTTCATGACGCAATTTCGTCAGAATATGATATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

54.341

100

0.543
  comYH Streptococcus mutans UA140

54.341

100

0.543

Multiple sequence alignment