Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GU336_RS02680 Genome accession   NZ_CP047616
Coordinates   509003..509791 (+) Length   262 a.a.
NCBI ID   WP_061773740.1    Uniprot ID   A0A2A5SID2
Organism   Lactococcus raffinolactis strain Lr_19_5     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 504003..514791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU336_RS02655 (GU336_02655) - 504863..505129 (+) 267 WP_061773735.1 IreB family regulatory phosphoprotein -
  GU336_RS02660 (GU336_02660) ruvX 505126..505551 (+) 426 WP_096039966.1 Holliday junction resolvase RuvX -
  GU336_RS02665 (GU336_02665) - 505572..505895 (+) 324 WP_061773737.1 DUF1292 domain-containing protein -
  GU336_RS02670 (GU336_02670) - 505989..507233 (-) 1245 WP_167838411.1 MFS transporter -
  GU336_RS02675 (GU336_02675) - 507467..508897 (+) 1431 WP_082785334.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  GU336_RS02680 (GU336_02680) codY 509003..509791 (+) 789 WP_061773740.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GU336_RS02685 (GU336_02685) aspS 510213..511976 (+) 1764 WP_061773741.1 aspartate--tRNA ligase -
  GU336_RS02690 (GU336_02690) gatC 512291..512584 (+) 294 WP_003140469.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  GU336_RS02695 (GU336_02695) gatA 512587..514035 (+) 1449 WP_167838412.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  GU336_RS02700 (GU336_02700) - 514038..514643 (+) 606 WP_138492071.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28809.99 Da        Isoelectric Point: 4.8340

>NTDB_id=414634 GU336_RS02680 WP_061773740.1 509003..509791(+) (codY) [Lactococcus raffinolactis strain Lr_19_5]
MTTLLEKTRRITAILQEGLNNSSEELPYNGLSERLSAVIDCNSVVIDGKGVVLGYAMPYKTNNDRVEAMFDERKLSDEYV
QVASRTYDTEANLPADAMLSLYPQEVVKDHPHGKTTVAPIYGSGLRLGTFIIWRNEEAFSDDDLVLVELATTVIGIQLSN
LQIEKMEENIRKAAAVNMAVSTLSYSEMKAVKAILEELGGIEGRLTASVIADKIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVVNSGIYEKLEGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=414634 GU336_RS02680 WP_061773740.1 509003..509791(+) (codY) [Lactococcus raffinolactis strain Lr_19_5]
ATGACTACTTTATTAGAAAAAACAAGAAGAATCACGGCGATTTTGCAAGAAGGACTCAATAATTCTAGCGAAGAATTACC
GTACAATGGCTTATCAGAACGCTTATCAGCGGTAATTGATTGTAACTCTGTTGTCATCGATGGCAAGGGTGTTGTGCTTG
GCTATGCCATGCCATACAAGACAAACAACGACCGTGTTGAAGCGATGTTTGATGAACGCAAGTTATCAGATGAGTACGTT
CAAGTCGCATCACGTACTTATGATACTGAAGCTAACTTACCTGCAGATGCGATGCTATCACTTTATCCACAAGAAGTTGT
CAAAGATCACCCGCATGGTAAAACAACAGTTGCACCGATTTATGGTAGTGGCTTGCGTTTAGGAACATTTATCATCTGGC
GCAATGAAGAAGCGTTTAGTGATGATGATCTTGTCTTGGTTGAATTGGCAACAACAGTTATCGGGATTCAATTGTCAAAT
CTTCAAATCGAGAAGATGGAAGAAAACATCCGTAAGGCGGCAGCAGTTAATATGGCAGTTAGCACACTTTCTTATTCTGA
AATGAAAGCTGTTAAAGCGATTCTTGAAGAATTAGGTGGTATCGAAGGCCGTTTGACAGCTTCAGTAATTGCTGATAAAA
TTGGTATTACACGTTCAGTGATCGTGAATGCTCTTCGTAAGCTAGAGTCAGCTGGGATTATCGAATCTCGTTCACTTGGC
ATGAAGGGAACTTACCTTAAAGTTGTCAATTCAGGTATTTATGAAAAACTTGAAGGTCGCAACTTTTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5SID2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

69.847

100

0.698
  codY Bacillus subtilis subsp. subtilis str. 168

45.882

97.328

0.447

Multiple sequence alignment