Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GU337_RS01910 Genome accession   NZ_CP047614
Coordinates   375377..377149 (+) Length   590 a.a.
NCBI ID   WP_167839713.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain Lr_19_7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 370377..382149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU337_RS01885 (GU337_01885) - 370463..371893 (+) 1431 WP_167839711.1 histidine kinase -
  GU337_RS01890 (GU337_01890) - 371991..373208 (+) 1218 WP_167839712.1 response regulator -
  GU337_RS01895 (GU337_01895) - 373443..373760 (+) 318 Protein_347 substrate-binding domain-containing protein -
  GU337_RS01900 (GU337_01900) - 373810..374700 (+) 891 WP_245325896.1 iron-containing alcohol dehydrogenase -
  GU337_RS01905 (GU337_01905) - 374851..375306 (+) 456 WP_096039973.1 MarR family transcriptional regulator -
  GU337_RS01910 (GU337_01910) rcrP 375377..377149 (+) 1773 WP_167839713.1 ABC transporter ATP-binding protein Regulator
  GU337_RS01915 (GU337_01915) rcrQ 377149..379014 (+) 1866 WP_061773762.1 ABC transporter ATP-binding protein Regulator
  GU337_RS01920 (GU337_01920) - 379138..379896 (+) 759 WP_167839714.1 tyrosine-protein phosphatase -
  GU337_RS01925 (GU337_01925) - 380170..380577 (+) 408 WP_167839715.1 hypothetical protein -
  GU337_RS01930 (GU337_01930) - 380642..380998 (+) 357 WP_061773765.1 hypothetical protein -
  GU337_RS01935 (GU337_01935) - 381096..381389 (+) 294 WP_167839716.1 hypothetical protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64917.46 Da        Isoelectric Point: 8.8629

>NTDB_id=414582 GU337_RS01910 WP_167839713.1 375377..377149(+) (rcrP) [Lactococcus raffinolactis strain Lr_19_7]
MFKILKKITGKELRYVGISLIFIVIQVYLDLKLPDYMSKVTKLIQEKGTTVSQIFDEGRWMVLCAFGSLVAAVIVGFFAA
KVAAGLSRTLRHDVYHQVSEYSMAEINQFSTASLITRSTNDITQVQMIVAMGLQLSIKAPITAVWAIMKIANKSWEWTTA
LGAAVLFLLVMISIIVTLAMPRFKIIQKLTDKLNSVTRENLTGIRVVRAYNAQKYQTDKFEKANDDITSTNLFIQRAMAF
MMPMMSLVSSGLSVAVYLIGATIIKAASVGTPANSPRINLFSDMVVFTSYGMQVVMAFMMLTMIFIMFPRANVSAGRINE
VIDTASSIKNGEKDGSAAKEVGTVEFKNVYFQYADASEHVLEGVSFKANKGETVAFIGSTGSGKSTLINLIPRYYDVTAG
QVLVDGVNVKEYTEEALHDKMGFIPQKPVMFNGTIRSNLAFGTNAHGDMSDEDLMAAARIAQAEEFILKNPEGLNAEVSQ
GGLNLSGGQKQRLAIARAIARKPEILVFDDSFSALDYKTDRVLRDTLKRETAETTKLIVAQRIGTIIDADQIIVLDKGKV
VGRGTHDELMASNEVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=414582 GU337_RS01910 WP_167839713.1 375377..377149(+) (rcrP) [Lactococcus raffinolactis strain Lr_19_7]
ATGTTTAAAATCTTAAAAAAAATCACTGGAAAAGAGCTCAGATACGTCGGTATCAGCCTGATTTTCATTGTCATCCAGGT
GTATTTAGACCTTAAATTACCGGATTACATGAGCAAAGTGACCAAATTGATCCAAGAAAAAGGCACAACCGTGTCGCAAA
TCTTTGATGAAGGTCGCTGGATGGTCCTCTGTGCCTTTGGCTCACTCGTCGCCGCAGTCATTGTCGGCTTCTTTGCTGCC
AAGGTAGCCGCTGGCTTATCACGGACGCTGCGTCATGATGTCTACCATCAAGTCTCAGAGTATTCAATGGCTGAAATCAA
CCAGTTTTCAACTGCCAGCCTGATTACCCGTTCAACCAACGACATTACCCAAGTCCAAATGATCGTGGCTATGGGGCTAC
AACTCAGTATCAAAGCTCCGATCACTGCCGTTTGGGCCATCATGAAAATTGCCAACAAATCATGGGAATGGACGACCGCT
TTAGGTGCTGCTGTTCTCTTCCTTCTCGTCATGATCAGTATTATCGTGACGCTTGCCATGCCTCGTTTCAAGATTATCCA
AAAATTAACGGATAAACTAAATTCCGTGACCCGTGAAAACCTGACTGGGATTCGTGTGGTCCGTGCTTATAACGCTCAAA
AATATCAAACCGATAAATTTGAAAAAGCCAACGACGATATTACGTCAACCAACCTCTTCATTCAACGCGCTATGGCCTTC
ATGATGCCCATGATGTCTCTTGTGTCATCTGGCCTGTCAGTTGCCGTTTACTTGATTGGTGCGACCATTATTAAAGCTGC
AAGCGTTGGGACACCTGCTAATTCACCTCGGATCAATCTCTTTTCAGACATGGTCGTGTTCACGTCTTATGGAATGCAAG
TTGTGATGGCCTTTATGATGTTGACCATGATTTTCATCATGTTCCCGCGTGCCAATGTCTCTGCTGGTCGGATTAATGAA
GTCATTGATACCGCCTCAAGCATTAAAAACGGGGAAAAAGATGGTTCAGCAGCTAAAGAAGTTGGGACTGTCGAGTTTAA
GAACGTCTATTTCCAATACGCTGATGCCTCTGAACACGTTCTTGAAGGTGTTTCTTTCAAGGCCAATAAAGGCGAAACGG
TTGCCTTCATCGGCTCAACCGGTTCTGGTAAATCAACATTAATCAACCTCATCCCGCGTTACTATGATGTGACAGCCGGT
CAAGTCTTGGTTGATGGCGTCAATGTTAAGGAATATACAGAAGAAGCCTTGCACGATAAAATGGGCTTCATCCCGCAAAA
ACCAGTGATGTTTAACGGAACGATTCGGTCAAACTTGGCCTTTGGGACTAATGCTCATGGTGACATGAGTGATGAAGACT
TAATGGCAGCTGCACGGATCGCCCAAGCTGAAGAATTTATACTGAAAAACCCTGAAGGCTTAAACGCTGAAGTATCTCAG
GGTGGTCTTAACCTGTCCGGTGGTCAAAAGCAACGGCTAGCGATTGCTCGTGCCATTGCCCGCAAGCCTGAAATTCTCGT
CTTTGATGATAGTTTTTCAGCTTTGGACTATAAGACTGACCGTGTCTTACGCGATACCTTGAAACGTGAAACAGCAGAAA
CGACGAAACTGATTGTTGCCCAACGGATTGGCACGATTATCGATGCCGATCAAATTATTGTTTTGGATAAAGGGAAAGTC
GTGGGTCGTGGGACACATGATGAGTTGATGGCTAGCAATGAAGTCTATCAAGAAATCGCCTATTCACAACTGTCTAAGGA
GGAATTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-268)

ABC transporter (ABC_tran)

(361-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

54.866

100

0.554

Multiple sequence alignment