Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrQ   Type   Regulator
Locus tag   Ami3637_RS18870 Genome accession   NZ_CP047591
Coordinates   3511647..3512198 (-) Length   183 a.a.
NCBI ID   WP_334297039.1    Uniprot ID   -
Organism   Aminipila terrae strain CBA3637     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 3506647..3517198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ami3637_RS18870 rcrQ 3511647..3512198 (-) 552 WP_334297039.1 ATP-binding cassette domain-containing protein Regulator

Sequence


Protein


Download         Length: 183 a.a.        Molecular weight: 20549.83 Da        Isoelectric Point: 7.4026

>NTDB_id=414376 Ami3637_RS18870 WP_334297039.1 3511647..3512198(-) (rcrQ) [Aminipila terrae strain CBA3637]
MDGTPISQVPRENVHQQFCMVLQDSWLFEGTIKENIIYSKQGITEEQVVKACKTVGLHHFIKTLPEGYDTILNDKASLSE
GQKQLITIARAMIQNAPLLILDEATSSVDTRTERIVQSAMDQLTVGRTSFVIAHRLSTIKNADLILVMKDGISLKVVIIK
SCLHRVDSMQSFITVNLNQQHKF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=414376 Ami3637_RS18870 WP_334297039.1 3511647..3512198(-) (rcrQ) [Aminipila terrae strain CBA3637]
TTGGATGGAACACCAATCAGCCAGGTACCACGGGAGAATGTACATCAGCAATTCTGCATGGTTTTACAGGATTCATGGCT
GTTTGAAGGCACAATAAAAGAGAATATTATTTACAGCAAGCAGGGCATCACAGAAGAACAGGTGGTGAAAGCCTGCAAAA
CCGTGGGTTTGCATCATTTTATCAAAACCTTGCCTGAGGGATATGATACGATATTAAACGATAAGGCCAGTCTGTCAGAA
GGACAGAAACAGCTTATTACTATTGCCCGGGCAATGATACAGAACGCACCGCTGCTGATTTTAGATGAAGCAACCAGTTC
AGTAGATACCCGTACGGAGCGTATTGTTCAATCTGCAATGGATCAGCTGACGGTTGGCAGAACTTCTTTTGTCATTGCCC
ACAGGCTTTCCACCATTAAGAATGCAGACTTGATTCTTGTGATGAAAGACGGGATATCATTGAAAGTGGTAATCATAAAG
AGTTGCTTGCACAGAGTGGATTCTATGCAGAGCTTTATAACAGTCAATTTGAATCAGCAGCATAAATTTTAA

Domains


Predicted by InterproScan.

(2-106)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

69.536

82.514

0.574


Multiple sequence alignment