Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I5155_RS30760 Genome accession   NZ_CP060243
Coordinates   6506300..6506896 (-) Length   198 a.a.
NCBI ID   WP_015647905.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain A-I-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6501300..6511896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5155_RS30740 (I5155_006312) aroK 6502442..6502960 (-) 519 WP_003095833.1 shikimate kinase AroK -
  I5155_RS30745 (I5155_006313) pilQ 6502972..6505144 (-) 2173 Protein_6108 type 4a pilus secretin PilQ -
  I5155_RS30750 (I5155_006314) comL/pilP 6505159..6505683 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  I5155_RS30755 (I5155_006315) pilO 6505680..6506303 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  I5155_RS30760 (I5155_006316) pilN 6506300..6506896 (-) 597 WP_015647905.1 type 4a pilus biogenesis protein PilN Machinery gene
  I5155_RS30765 (I5155_006317) pilM 6506896..6507960 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  I5155_RS30770 (I5155_006318) - 6508145..6510613 (+) 2469 WP_025297613.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22199.52 Da        Isoelectric Point: 10.0895

>NTDB_id=414042 I5155_RS30760 WP_015647905.1 6506300..6506896(-) (pilN) [Pseudomonas aeruginosa strain A-I-1]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAVENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=414042 I5155_RS30760 WP_015647905.1 6506300..6506896(-) (pilN) [Pseudomonas aeruginosa strain A-I-1]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCGTCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ATAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.143

88.384

0.364