Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | I5155_RS27910 | Genome accession | NZ_CP060243 |
| Coordinates | 5871028..5871453 (+) | Length | 141 a.a. |
| NCBI ID | WP_003094721.1 | Uniprot ID | G3XD43 |
| Organism | Pseudomonas aeruginosa strain A-I-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5866028..5876453
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I5155_RS27895 (I5155_005735) | pilX | 5866592..5867179 (+) | 588 | WP_015648054.1 | type 4a pilus minor pilin PilX | - |
| I5155_RS27900 (I5155_005736) | pilY1 | 5867191..5870682 (+) | 3492 | WP_015648053.1 | type 4a pilus biogenesis protein PilY1 | - |
| I5155_RS27905 (I5155_005737) | pilY2 | 5870684..5871031 (+) | 348 | WP_003102609.1 | type 4a fimbrial biogenesis protein PilY2 | - |
| I5155_RS27910 (I5155_005738) | comF | 5871028..5871453 (+) | 426 | WP_003094721.1 | type 4a pilus minor pilin PilE | Machinery gene |
| I5155_RS27915 (I5155_005739) | ispH | 5871500..5872444 (-) | 945 | WP_003094724.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| I5155_RS27920 (I5155_005740) | fkpB | 5872530..5872970 (-) | 441 | WP_003102613.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| I5155_RS27925 (I5155_005741) | lspA | 5872963..5873472 (-) | 510 | WP_003102615.1 | signal peptidase II | - |
| I5155_RS27930 (I5155_005742) | ileS | 5873465..5876296 (-) | 2832 | WP_004352756.1 | isoleucine--tRNA ligase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15279.30 Da Isoelectric Point: 10.0198
>NTDB_id=414035 I5155_RS27910 WP_003094721.1 5871028..5871453(+) (comF) [Pseudomonas aeruginosa strain A-I-1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR
Nucleotide
Download Length: 426 bp
>NTDB_id=414035 I5155_RS27910 WP_003094721.1 5871028..5871453(+) (comF) [Pseudomonas aeruginosa strain A-I-1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baylyi ADP1 |
42.188 |
90.78 |
0.383 |