Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GTW28_RS09015 Genome accession   NZ_CP047485
Coordinates   1704584..1705363 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain BJQ0005     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699584..1710363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS08995 (GTW28_08995) trmFO 1700277..1701584 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GTW28_RS09000 (GTW28_09000) xerC 1701652..1702566 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  GTW28_RS09005 (GTW28_09005) clpQ 1702579..1703124 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  GTW28_RS09010 (GTW28_09010) hslU 1703132..1704544 (+) 1413 WP_257726424.1 HslU--HslV peptidase ATPase subunit -
  GTW28_RS09015 (GTW28_09015) codY 1704584..1705363 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GTW28_RS09020 (GTW28_09020) flgB 1705743..1706132 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  GTW28_RS09025 (GTW28_09025) flgC 1706132..1706584 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  GTW28_RS09030 (GTW28_09030) fliE 1706595..1706915 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  GTW28_RS09035 (GTW28_09035) fliF 1706961..1708571 (+) 1611 WP_046381024.1 flagellar basal-body MS-ring/collar protein FliF -
  GTW28_RS09040 (GTW28_09040) fliG 1708584..1709600 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  GTW28_RS09045 (GTW28_09045) fliH 1709593..1710345 (+) 753 WP_038430009.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=413676 GTW28_RS09015 WP_003220850.1 1704584..1705363(+) (codY) [Bacillus subtilis strain BJQ0005]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=413676 GTW28_RS09015 WP_003220850.1 1704584..1705363(+) (codY) [Bacillus subtilis strain BJQ0005]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTTAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment