Detailed information NTG0413609

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: XFGV230_RS03460
• Genome accession: NZ_CP060159
• Coordinates: 825556..826917 (+)
• Length: 453 a.a.
• NCBI ID: WP_011097739.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. fastidiosa strain GV230
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 820556..831917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XFGV230_RS03450 (XFGV230_03450)	-	822316..824226 (+)	1911	WP_004089128.1	DUF3857 domain-containing transglutaminase family protein	-
XFGV230_RS03455 (XFGV230_03455)	lolA	824788..825414 (+)	627	WP_004089126.1	outer membrane lipoprotein chaperone LolA	-
XFGV230_RS03460 (XFGV230_03460)	rarA	825556..826917 (+)	1362	WP_011097739.1	replication-associated recombination protein A	Machinery gene
XFGV230_RS03465 (XFGV230_03465)	crcB	827078..827479 (+)	402	WP_004089119.1	fluoride efflux transporter CrcB	-
XFGV230_RS03470 (XFGV230_03470)	-	828153..829649 (+)	1497	WP_185864786.1	ATP-binding protein	-
XFGV230_RS03475 (XFGV230_03475)	folK	829774..830298 (+)	525	WP_038231892.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
XFGV230_RS03480 (XFGV230_03480)	-	830309..831046 (-)	738	WP_004089106.1	pteridine reductase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50554.75 Da
• Isoelectric Point: 6.7781

>NTDB_id=413609 XFGV230_RS03460 WP_011097739.1 825556..826917(+) (rarA) [Xylella fastidiosa subsp. fastidiosa strain GV230]
MTRQRFPTLQHDLLGVAPLLQPLAERMRPRTLHEMVGQKRLLDPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHY
IDAEFRSVSAVLSGLPEVRQILADAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSAL
LSRCRVHVLEAVSSQDIVVALQRALQDTERGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIAAELAQDEQITADLLS
QVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRIAIEDIGLADPRAQSMALEAW
DIYERLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENG
VALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDWLRAARAQIQADKPQPPRA

Nucleotide

• Length: 1362 bp

>NTDB_id=413609 XFGV230_RS03460 WP_011097739.1 825556..826917(+) (rarA) [Xylella fastidiosa subsp. fastidiosa strain GV230]
GTGACACGACAGCGCTTTCCGACTCTTCAGCATGATTTGCTTGGTGTGGCTCCTCTCTTGCAGCCACTGGCCGAGCGCAT
GCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGACCCAGATCGTGCATTGCATCGTGCGGTTGCTT
CCGGGCATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATTAC
ATTGATGCAGAATTTCGGTCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGACGCTGCGCA
GCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTTTC
TGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGTTA
CTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATTGTTGTGGCATTGCAGCGGGCGTTGCAGGA
TACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTCAAGCCTCTCTGTTGGAGATTGCCAAGGCTGCAGATGGTG
ACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGCAGATAACCGCTGACTTGCTTTCG
CAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTGCACAAGAG
TGTACGTAGTTCCAACCCGGATGCGGCATTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTATCTACTTGG
CCCGGCGCTTGACCCGCATAGCGATTGAGGATATTGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGGAGGCTTGG
GATATCTATGAGCGGTTGGGTAGCCCGGAGGGAGATCTGGCGTTCGCGCAGTTGGTGCTGTACTTGGCAAGTACAGCAAA
ATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACTCAGGATGTTCCGCTACATC
TGCGCAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGAGTATCAGTACGATCATGATGCTGAGAACGGT
GTTGCGCTGGAACAGACTTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTATCAACCGGTATCCCGCGGTCTGGAGAT
TAAGCTGAAGGAGAAGTTGGACTGGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCCGCCGCGTGCAT
AG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (194-269)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (27-146)

• MgsA AAA+ ATPase C terminal (MgsA_C) (271-436)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.243	93.377	0.366