Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H6X75_RS09435 Genome accession   NZ_CP060156
Coordinates   1874125..1874946 (-) Length   273 a.a.
NCBI ID   WP_001820424.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700608     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1869125..1879946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6X75_RS09390 (H6X75_09395) - 1869669..1869986 (-) 318 WP_000615767.1 thioredoxin family protein -
  H6X75_RS09395 (H6X75_09400) - 1869983..1870282 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  H6X75_RS09400 - 1870480..1870560 (-) 81 WP_223716573.1 hypothetical protein -
  H6X75_RS09405 (H6X75_09405) - 1870567..1870758 (-) 192 WP_000291826.1 cell wall-binding protein -
  H6X75_RS09410 (H6X75_09410) - 1870919..1871593 (-) 675 WP_000725744.1 hypothetical protein -
  H6X75_RS09415 (H6X75_09415) - 1871599..1872045 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  H6X75_RS09420 (H6X75_09420) - 1872159..1872662 (-) 504 WP_000800944.1 phosphatase PAP2 family protein -
  H6X75_RS09425 (H6X75_09425) - 1872659..1873021 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  H6X75_RS09430 rcrQ 1873087..1874118 (-) 1032 WP_000506432.1 ATP-binding cassette domain-containing protein Regulator
  H6X75_RS09435 rcrP 1874125..1874946 (-) 822 WP_001820424.1 ABC transporter permease Regulator
  H6X75_RS09440 (H6X75_09435) - 1874962..1875432 (-) 471 WP_000517879.1 MarR family winged helix-turn-helix transcriptional regulator -
  H6X75_RS09445 (H6X75_09440) - 1875638..1876894 (+) 1257 WP_000436237.1 ISL3-like element IS1167A family transposase -
  H6X75_RS09450 (H6X75_09445) - 1876979..1877695 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30473.10 Da        Isoelectric Point: 5.9135

>NTDB_id=413551 H6X75_RS09435 WP_001820424.1 1874125..1874946(-) (rcrP) [Streptococcus pneumoniae strain PZ900700608]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMLFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTCGPIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=413551 H6X75_RS09435 WP_001820424.1 1874125..1874946(-) (rcrP) [Streptococcus pneumoniae strain PZ900700608]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCTCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGTGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTG
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(3-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

57.544

100

0.601