Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   GTO84_RS07855 Genome accession   NZ_CP047412
Coordinates   1595639..1596469 (-) Length   276 a.a.
NCBI ID   WP_003709392.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain 2D     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1590639..1601469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTO84_RS07835 (GTO84_07885) - 1591770..1592726 (+) 957 WP_034982426.1 DhaKLM operon coactivator DhaQ -
  GTO84_RS07840 (GTO84_07890) dhaS 1592727..1593251 (-) 525 WP_180858197.1 dihydroxyacetone kinase transcriptional activator DhaS -
  GTO84_RS07845 (GTO84_07895) brnQ 1593397..1594779 (-) 1383 WP_003701015.1 branched-chain amino acid transport system II carrier protein -
  GTO84_RS07850 (GTO84_07900) - 1595318..1595584 (+) 267 WP_003701014.1 hypothetical protein -
  GTO84_RS07855 (GTO84_07905) endA 1595639..1596469 (-) 831 WP_003709392.1 DNA/RNA non-specific endonuclease Machinery gene
  GTO84_RS07860 (GTO84_07910) - 1596838..1597440 (+) 603 WP_003701011.1 nitroreductase family protein -
  GTO84_RS07865 (GTO84_07915) - 1597493..1599424 (-) 1932 WP_180858199.1 heavy metal translocating P-type ATPase -
  GTO84_RS07870 (GTO84_07920) - 1599547..1599888 (+) 342 WP_003701009.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30410.73 Da        Isoelectric Point: 10.4970

>NTDB_id=413382 GTO84_RS07855 WP_003709392.1 1595639..1596469(-) (endA) [Ligilactobacillus salivarius strain 2D]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=413382 GTO84_RS07855 WP_003709392.1 1595639..1596469(-) (endA) [Ligilactobacillus salivarius strain 2D]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACTGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGCCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGGCAGGTACAAAATTTGCCTGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCACTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAATCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAAGACTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489

Multiple sequence alignment