Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H5404_RS00485 Genome accession   NZ_CP060087
Coordinates   114993..115847 (-) Length   284 a.a.
NCBI ID   WP_025535048.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJA114     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 109993..120847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS00470 (H5404_00470) - 111338..113308 (+) 1971 WP_140218562.1 replication initiator protein RctB domain-containing protein -
  H5404_RS00475 (H5404_00475) - 113597..114064 (-) 468 WP_021484244.1 hypothetical protein -
  H5404_RS00480 (H5404_00480) - 114064..114996 (-) 933 WP_140218566.1 ABC transporter ATP-binding protein -
  H5404_RS00485 (H5404_00485) amiE 114993..115847 (-) 855 WP_025535048.1 ABC transporter ATP-binding protein Regulator
  H5404_RS00490 (H5404_00490) - 116210..116410 (+) 201 WP_005477395.1 PA3496 family putative envelope integrity protein -
  H5404_RS00495 (H5404_00495) ribA 116654..117715 (+) 1062 WP_005477438.1 GTP cyclohydrolase II -
  H5404_RS00500 (H5404_00500) - 117821..118576 (-) 756 WP_005484702.1 substrate-binding periplasmic protein -
  H5404_RS00505 (H5404_00505) - 118645..120543 (+) 1899 WP_140218568.1 ATP-binding protein -

Sequence

Protein


Download         Length: 284 a.a.        Molecular weight: 31982.56 Da        Isoelectric Point: 6.3087

>NTDB_id=413369 H5404_RS00485 WP_025535048.1 114993..115847(-) (amiE) [Vibrio parahaemolyticus strain TJA114]
MSEINLSHAFHSDPVIQIRDLCVDYITDNGDFNAVKSVSFDIGKGEVFGLAGESGCGKSTIAFSINRLHKPPAFISGGQI
LFQGKDILRLSDKELGALRWSEIAMVFQSAMNSLNPVLTIQEQFADVLRHHQGLSNEQAKDRAEKLLDLVNIPRDRLGEY
PHQFSGGMRQRLVIAIALSLNPKLIIMDEPTTALDVVVQREILQQIYQLREEFGFSVLFITHDLALMSQLCDRIAIMRHG
EIVEVNHAYEIRNHPQHPYTQKLWASFPNIHDVHKQPEQQGAPA

Nucleotide


Download         Length: 855 bp        

>NTDB_id=413369 H5404_RS00485 WP_025535048.1 114993..115847(-) (amiE) [Vibrio parahaemolyticus strain TJA114]
ATGAGTGAGATTAATTTAAGTCACGCCTTTCACAGCGATCCGGTCATCCAGATCCGAGATTTGTGCGTGGACTACATCAC
CGACAATGGTGACTTTAATGCGGTGAAATCGGTCAGCTTTGATATTGGAAAAGGCGAAGTATTCGGCCTTGCTGGGGAAT
CTGGATGCGGAAAGAGTACCATCGCTTTTTCGATCAATCGTCTGCACAAGCCGCCCGCGTTTATCTCTGGCGGACAAATT
CTGTTCCAAGGTAAGGACATCTTACGTTTGTCCGATAAGGAGCTAGGAGCGCTGCGTTGGAGCGAAATCGCCATGGTATT
CCAAAGTGCCATGAATTCGCTTAATCCGGTACTGACCATTCAAGAGCAGTTTGCAGACGTCCTACGTCATCATCAAGGAC
TCAGCAACGAGCAAGCCAAAGATCGCGCCGAAAAACTGCTCGATTTGGTGAACATCCCTCGAGATCGACTGGGTGAATAT
CCGCACCAGTTCTCTGGGGGAATGCGCCAAAGGCTGGTTATTGCCATCGCGCTGTCTTTAAACCCTAAGCTCATCATTAT
GGATGAACCAACGACAGCGCTTGATGTGGTGGTGCAGCGAGAGATCCTGCAACAAATTTATCAGCTGAGAGAAGAATTTG
GTTTCTCAGTTCTTTTCATCACTCACGATTTAGCTTTGATGAGCCAACTGTGCGACCGCATCGCCATCATGCGCCATGGT
GAGATCGTAGAAGTCAATCACGCTTACGAGATCCGCAATCACCCACAACACCCTTACACCCAAAAATTGTGGGCCTCGTT
CCCCAATATTCACGATGTTCACAAGCAGCCAGAGCAACAAGGAGCACCAGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(36-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42.529

91.901

0.391
  amiE Streptococcus thermophilus LMD-9

42.529

91.901

0.391
  amiE Streptococcus salivarius strain HSISS4

42.146

91.901

0.387