Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   H5409_RS28325 Genome accession   NZ_CP060086
Coordinates   6139225..6139749 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain JNQH-PA57     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6134225..6144749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5409_RS28310 (H5409_28310) aroB 6135353..6136459 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  H5409_RS28315 (H5409_28315) aroK 6136509..6137027 (-) 519 WP_003095833.1 shikimate kinase AroK -
  H5409_RS28320 (H5409_28320) pilQ 6137039..6139171 (-) 2133 WP_023100018.1 type 4a pilus secretin PilQ Machinery gene
  H5409_RS28325 (H5409_28325) comL/pilP 6139225..6139749 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  H5409_RS28330 (H5409_28330) pilO 6139746..6140369 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  H5409_RS28335 (H5409_28335) pilN 6140366..6140962 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  H5409_RS28340 (H5409_28340) pilM 6140962..6142026 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  H5409_RS28345 (H5409_28345) - 6142211..6144682 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=413346 H5409_RS28325 WP_003116136.1 6139225..6139749(-) (comL/pilP) [Pseudomonas aeruginosa strain JNQH-PA57]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=413346 H5409_RS28325 WP_003116136.1 6139225..6139749(-) (comL/pilP) [Pseudomonas aeruginosa strain JNQH-PA57]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCAGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GACGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362

Multiple sequence alignment