Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FHE72_RS15745 Genome accession   NZ_CP047394
Coordinates   3054779..3057142 (-) Length   787 a.a.
NCBI ID   WP_159362289.1    Uniprot ID   -
Organism   Rossellomorea vietnamensis strain 151-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3049779..3062142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHE72_RS15730 (FHE72_15730) dtd 3051375..3051818 (-) 444 WP_034757303.1 D-aminoacyl-tRNA deacylase -
  FHE72_RS15735 (FHE72_15735) - 3051832..3054021 (-) 2190 WP_159362288.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  FHE72_RS15740 (FHE72_15740) - 3054276..3054788 (-) 513 WP_034757299.1 adenine phosphoribosyltransferase -
  FHE72_RS15745 (FHE72_15745) recJ 3054779..3057142 (-) 2364 WP_159362289.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FHE72_RS15750 (FHE72_15750) - 3057226..3057366 (+) 141 WP_159362290.1 hypothetical protein -
  FHE72_RS15755 (FHE72_15755) - 3057456..3057791 (-) 336 WP_034757294.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  FHE72_RS15760 (FHE72_15760) - 3057807..3058733 (-) 927 WP_159362291.1 cation diffusion facilitator family transporter -
  FHE72_RS15765 (FHE72_15765) secDF 3058836..3061100 (-) 2265 WP_159362292.1 protein translocase subunit SecDF -
  FHE72_RS15770 (FHE72_15770) - 3061233..3061553 (-) 321 WP_034757287.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88619.80 Da        Isoelectric Point: 4.7794

>NTDB_id=413263 FHE72_RS15745 WP_159362289.1 3054779..3057142(-) (recJ) [Rossellomorea vietnamensis strain 151-6]
MLNSKTRWILTETDEHKIAELANELKVPSLVAKLLINRDLDDVEEARNFLFDSGDSFHDPFLFEDMIKATERIHKAIQDG
ERILVYGDYDADGVSSTSVMMTVLRDLGAEVEFYIPNRFSEGYGPNEGAFRWAKDEEFSLIITVDTGISAVNEAKLAKDL
GMDLIITDHHEPGPELPETYALLHPKVGEAPYPFGELAGVGVAFKLAHALYGELPTHLLDLAAIGTIADLVPLRGENRLL
AKRGLAELRGSNRLGIKALCKIANAKQHEITEETVGFMIAPRINAVGRLGDADPAVDLMLTEDEEEAKALAEEIDGLNKE
RQAIVAQMTEEAVEMVERDFPLKDNHVLVIGKEGWNPGVVGIVASRLVEKFYRPTIVLSYDSEKGTAKGSARSIVGFDLF
KNLSTCRDILPHFGGHPMAAGMTLQLDDVSQLRSRLNELAGSELTSEDFIPVTQLDAPVTVDEITVESIEKLQLLAPFGM
KNPKPKWIIDNVSIEHYKKIGSAQNHLKLVLGDEGIQLDGVGFGLGELADHMTPFSNASVIGELSINEWNNRKKPQVFLH
DVKIDHWQLFDVRGIKQVHKWNGLIPEENKKMICFHPSTLDKLNLPKDEVILLEESSTLDGLSTEKASLVLLDLPNSKPL
LEELLKKGRPHRIYAHFFQEEDHFFSTMPTRDHFKWYYGFLTKRGSFDVNKHGDDLAKYKGWSKETIDFMSQVFFDLKFV
TIDNGFISLNPAKTKKDLSESRTYQKKQQQYELENELLYSSYQELKTWFNERIEESVTIEEEVEAWT

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=413263 FHE72_RS15745 WP_159362289.1 3054779..3057142(-) (recJ) [Rossellomorea vietnamensis strain 151-6]
ATGTTAAACTCAAAAACACGTTGGATATTGACAGAAACAGATGAACATAAAATAGCAGAATTGGCAAATGAACTAAAAGT
ACCTTCGCTTGTAGCGAAATTATTGATAAATCGTGATTTGGATGATGTAGAAGAAGCCCGGAATTTTTTATTTGATTCTG
GCGATTCATTTCACGATCCATTTTTATTTGAAGATATGATAAAAGCAACGGAACGGATCCATAAGGCCATCCAGGACGGT
GAAAGAATTCTTGTCTACGGTGACTATGATGCTGATGGGGTCAGCTCAACGTCGGTTATGATGACGGTCCTGAGAGATCT
TGGAGCTGAAGTGGAATTTTATATCCCAAACCGTTTCAGCGAAGGATACGGTCCGAATGAAGGGGCGTTCCGCTGGGCTA
AGGATGAGGAGTTTTCGCTCATCATCACGGTCGATACAGGGATCTCTGCCGTGAACGAAGCTAAACTCGCGAAAGATCTC
GGGATGGATCTGATCATTACAGACCACCATGAACCTGGCCCCGAATTACCGGAAACCTACGCTCTACTCCATCCAAAAGT
GGGAGAAGCACCCTATCCGTTCGGTGAACTTGCCGGAGTAGGAGTGGCATTTAAATTGGCTCATGCCCTTTATGGTGAAC
TCCCGACCCATTTACTGGATCTTGCCGCGATTGGAACCATTGCGGATCTCGTTCCCTTGAGAGGGGAGAACCGCCTTCTG
GCTAAACGGGGTCTTGCGGAGCTCCGGGGTTCAAACCGGCTGGGGATCAAAGCTTTATGCAAAATCGCCAATGCGAAGCA
GCATGAAATTACCGAAGAGACGGTCGGCTTCATGATCGCTCCACGGATCAATGCCGTCGGTCGTTTAGGTGATGCCGATC
CTGCCGTTGACCTCATGCTTACAGAAGACGAAGAAGAGGCCAAGGCACTGGCAGAAGAAATTGACGGCTTGAATAAAGAA
AGACAGGCGATTGTCGCCCAGATGACCGAGGAAGCCGTTGAGATGGTGGAGCGGGACTTCCCGCTTAAGGATAACCATGT
ACTCGTCATCGGAAAAGAAGGCTGGAATCCAGGAGTTGTCGGGATTGTGGCTTCCCGCCTTGTCGAAAAATTTTACCGGC
CGACCATCGTGCTAAGCTACGACTCTGAAAAAGGGACGGCGAAAGGGTCTGCGAGAAGCATCGTTGGTTTTGATCTATTT
AAAAATCTATCAACCTGCCGGGATATCCTTCCCCACTTCGGAGGACATCCGATGGCTGCCGGAATGACGCTGCAATTAGA
CGATGTATCTCAGTTGAGAAGCCGGTTGAATGAACTGGCCGGTTCGGAACTGACGTCCGAAGACTTCATCCCTGTCACAC
AACTCGATGCTCCTGTGACTGTGGACGAAATCACTGTTGAGTCGATTGAAAAGCTTCAGCTTTTGGCGCCTTTTGGAATG
AAAAATCCAAAGCCTAAGTGGATCATCGATAATGTGAGCATCGAGCACTATAAAAAAATCGGCTCTGCACAAAATCATCT
GAAGCTTGTTTTAGGGGACGAGGGCATTCAATTGGATGGTGTAGGCTTCGGGCTTGGAGAATTGGCTGACCATATGACGC
CTTTTTCCAATGCATCCGTCATTGGTGAACTATCCATAAATGAGTGGAACAACCGCAAGAAGCCCCAGGTGTTTTTACAT
GATGTGAAAATCGATCATTGGCAATTATTCGATGTGCGGGGAATCAAGCAGGTCCATAAATGGAACGGACTCATCCCAGA
AGAAAATAAGAAAATGATTTGTTTTCATCCATCCACGTTGGACAAACTGAACCTGCCTAAAGACGAAGTCATCCTCCTGG
AGGAAAGCTCGACTCTTGATGGGTTATCAACGGAGAAAGCGAGCCTTGTGCTCTTGGATCTGCCGAATTCCAAGCCTTTA
CTTGAAGAGCTTTTGAAGAAGGGGCGTCCTCACCGGATCTATGCTCATTTCTTCCAGGAAGAAGATCATTTCTTCAGTAC
GATGCCGACCCGGGACCATTTCAAATGGTACTACGGCTTTTTAACCAAAAGGGGATCGTTCGATGTCAATAAGCATGGCG
ATGACCTCGCCAAATACAAAGGCTGGTCAAAAGAAACAATCGATTTCATGTCACAGGTGTTTTTTGATTTGAAGTTTGTT
ACAATAGACAATGGATTTATTTCTCTTAATCCTGCGAAAACCAAGAAAGATCTTTCTGAATCTCGAACATATCAGAAGAA
ACAACAACAATACGAGCTTGAAAACGAATTGTTATATTCTTCCTATCAAGAGTTGAAGACTTGGTTTAATGAAAGGATAG
AAGAGTCTGTTACAATTGAGGAGGAAGTAGAAGCATGGACTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

RecJ OB domain (RecJ_OB)

(456-561)

DHHA1 domain (DHHA1)

(315-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.985

98.729

0.553

Multiple sequence alignment