Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GS400_RS14125 Genome accession   NZ_CP047393
Coordinates   2725113..2727443 (-) Length   776 a.a.
NCBI ID   WP_160102813.1    Uniprot ID   A0A6P1HKA8
Organism   Pontibacillus sp. HMF3514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2720113..2732443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS400_RS14110 (GS400_14110) - 2722738..2723742 (-) 1005 WP_236560954.1 AI-2E family transporter -
  GS400_RS14115 (GS400_14115) - 2724597..2724752 (-) 156 WP_160102809.1 YrzQ family protein -
  GS400_RS14120 (GS400_14120) - 2724777..2724965 (-) 189 WP_160102811.1 hypothetical protein -
  GS400_RS14125 (GS400_14125) recD2 2725113..2727443 (-) 2331 WP_160102813.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GS400_RS14130 (GS400_14130) - 2727496..2728170 (-) 675 WP_160102815.1 tetratricopeptide repeat protein -
  GS400_RS14135 (GS400_14135) mnmA 2728249..2729361 (-) 1113 WP_160102817.1 tRNA 2-thiouridine(34) synthase MnmA -
  GS400_RS14140 (GS400_14140) - 2729375..2730520 (-) 1146 WP_160102819.1 cysteine desulfurase family protein -
  GS400_RS14145 (GS400_14145) cymR 2730563..2730982 (-) 420 WP_160102821.1 cysteine metabolism transcriptional regulator CymR -
  GS400_RS14150 (GS400_14150) - 2730915..2731652 (-) 738 WP_370519697.1 YitT family protein -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 88356.94 Da        Isoelectric Point: 4.6138

>NTDB_id=413217 GS400_RS14125 WP_160102813.1 2725113..2727443(-) (recD2) [Pontibacillus sp. HMF3514]
MAMEEQLEGQLDTERGFIKGESVRMIYHNDEEHFSIALIRIEETNESIEDSEVVVKGHFSPLDKGEMYIFYGDLKDHPKF
GEQYQVNHYQKDIPTSKEGIVLYLSSDLFYGIGKTTAERIVATLGDRAIQHILQNPSVLDDVPYLKRDKADQLVADLRKH
QGFEHVVIALSEYGFGLQMAQKIYEAYQDKALEVLQDNPYQFVFDIDGFGFKRADEIASKHQISMDHPTRIQAACLYAIN
QWVQQGHVYAPSERFAEEVLAVLNDEEGMISNDIISREMKQLADEEKVILENGNIYLPSLYYAESGFVQQLHRVMLNEVE
EEYTQAELMKIVGEIEDEEDLSYGKEQFEAIEKALNSNIMILTGGPGTGKTTVIKGIITAYAKMNRKSLKPADYDQDEPY
PFLLTAPTGRAAKRMNESTGIPAVTIHRLLGWTGGEAFERDHNNPLTGKILIIDEFSMVDIWLANQLFRAIPEGMQVLLV
GDDDQLPSVGPGQVLSDLISSEKIPAVQLQEVYRQKEGSKIIQLAHDMKRGTCDRQSLTKANDFNFISCPEPQVLPVIEK
VYAKAMEKGHNLKDIQILAPMYRSKIGIHSLNHDIQQLANPPSRQKREIQLKDLTYRTGDKVIQLINQPESGVYNGDIGE
IVAIYKEDETQEQKEKLTVSFEGKEVEYLKKDLTQITHAYCTSIHKSQGSEFQIVILPVVRGFSRMLRRNLLYTAVTRSK
QSLIICGDEEAFIRGVNTVDTNQRYTTLQERLQELLDRPEDDEQDDEEELSPYDFM

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=413217 GS400_RS14125 WP_160102813.1 2725113..2727443(-) (recD2) [Pontibacillus sp. HMF3514]
ATGGCAATGGAAGAGCAATTAGAAGGACAATTGGATACAGAACGTGGCTTTATCAAAGGTGAATCCGTTCGTATGATTTA
CCATAATGATGAAGAGCACTTTTCCATTGCACTTATTCGTATCGAGGAAACGAATGAGTCGATTGAAGATAGTGAAGTCG
TGGTAAAAGGTCATTTTTCTCCTTTAGATAAAGGGGAAATGTACATTTTTTATGGAGATTTAAAGGATCACCCTAAATTT
GGTGAGCAATACCAGGTTAATCATTATCAAAAGGATATCCCGACATCTAAAGAGGGGATTGTCCTATACTTATCTAGTGA
CTTATTTTATGGAATTGGAAAAACAACAGCTGAGCGGATTGTTGCAACGCTAGGCGACCGTGCTATCCAACATATATTAC
AAAATCCTTCTGTTCTCGATGATGTTCCATACTTAAAACGTGATAAAGCGGATCAACTTGTAGCAGACCTACGCAAACAT
CAAGGGTTTGAACATGTTGTTATTGCGTTATCGGAGTATGGGTTTGGGTTGCAAATGGCACAAAAGATATATGAGGCTTA
TCAAGATAAAGCATTAGAGGTTCTTCAGGACAATCCTTATCAGTTTGTTTTTGATATCGATGGATTTGGGTTTAAAAGGG
CAGATGAAATCGCATCTAAACACCAAATAAGCATGGACCATCCCACTCGTATTCAGGCTGCTTGTCTTTATGCCATAAAT
CAGTGGGTCCAACAAGGTCATGTTTATGCGCCTTCTGAACGGTTTGCAGAAGAAGTATTAGCAGTTTTAAATGATGAAGA
GGGTATGATATCCAATGATATTATTTCCCGAGAAATGAAACAGCTGGCTGATGAAGAGAAAGTCATATTGGAGAACGGCA
ATATTTACTTGCCATCTTTATACTATGCAGAATCAGGCTTTGTTCAACAGCTTCATCGAGTGATGTTAAATGAAGTAGAG
GAAGAATATACCCAAGCAGAACTGATGAAAATTGTAGGTGAGATTGAAGACGAAGAAGATCTTAGTTATGGTAAAGAGCA
ATTTGAAGCTATAGAAAAAGCGCTCAATTCAAATATTATGATTTTGACAGGTGGTCCTGGTACTGGGAAAACTACCGTTA
TTAAAGGGATTATTACCGCCTACGCTAAAATGAATCGAAAGTCGTTAAAGCCTGCAGATTATGATCAAGATGAGCCCTAC
CCTTTCTTACTTACAGCTCCAACAGGTCGGGCAGCAAAACGCATGAATGAATCTACTGGTATCCCTGCGGTAACCATTCA
TAGGCTTTTAGGTTGGACTGGTGGTGAAGCCTTTGAACGAGACCACAACAATCCTCTGACGGGAAAAATACTTATTATTG
ATGAGTTTTCAATGGTAGATATATGGCTTGCTAATCAATTGTTTCGAGCTATCCCTGAAGGCATGCAAGTGCTCTTAGTA
GGGGACGATGATCAGCTTCCTTCTGTAGGTCCAGGTCAAGTCTTATCGGATTTAATCTCTTCAGAGAAGATACCTGCAGT
TCAGTTACAGGAAGTGTATCGCCAAAAAGAAGGCTCTAAGATTATTCAACTAGCCCATGATATGAAACGAGGGACTTGTG
ATCGTCAATCCTTAACGAAGGCGAATGACTTTAATTTCATTTCATGTCCAGAACCACAAGTTTTGCCCGTGATTGAAAAA
GTGTACGCTAAAGCAATGGAGAAAGGGCATAACCTTAAAGATATTCAAATTTTAGCTCCTATGTATCGTTCCAAGATTGG
GATCCATTCGCTAAATCATGATATTCAGCAATTGGCGAACCCACCTTCGAGACAAAAAAGAGAAATTCAGTTAAAGGATT
TAACCTATCGAACTGGGGATAAAGTGATTCAGCTCATAAATCAGCCTGAATCTGGGGTTTATAATGGAGATATCGGTGAA
ATTGTAGCCATTTACAAAGAAGATGAAACACAGGAGCAGAAGGAAAAGCTGACCGTTTCATTTGAAGGGAAAGAGGTTGA
ATATCTAAAAAAAGATTTAACCCAAATCACCCATGCATACTGCACGTCGATCCACAAATCTCAAGGTAGTGAATTCCAGA
TTGTGATTTTACCTGTAGTTCGTGGGTTTTCTCGTATGCTTCGTCGAAACTTATTGTACACTGCTGTTACAAGAAGTAAG
CAGTCGTTAATCATTTGTGGTGATGAAGAGGCATTTATACGTGGTGTGAATACGGTGGATACAAACCAGCGCTACACAAC
TCTCCAAGAAAGATTGCAGGAACTACTGGATCGACCTGAAGATGATGAACAGGATGATGAGGAAGAACTTTCCCCTTATG
ACTTTATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

AAA domain (AAA_30)

(343-549)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1HKA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.233

100

0.496

Multiple sequence alignment