Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H4P47_RS01425 Genome accession   NZ_CP060075
Coordinates   314030..314794 (-) Length   254 a.a.
NCBI ID   WP_001136249.1    Uniprot ID   -
Organism   Escherichia coli strain G3/10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 309030..319794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4P47_RS01395 (H4P47_01395) yhhJ 310095..311219 (+) 1125 WP_001216257.1 ABC transporter permease -
  H4P47_RS01400 (H4P47_01400) - 311292..311567 (+) 276 WP_001259388.1 type II toxin-antitoxin system HicA family toxin -
  H4P47_RS01405 (H4P47_01405) - 311564..311923 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  H4P47_RS01410 (H4P47_01410) - 312061..312758 (+) 698 WP_103215986.1 IS1-like element IS1A family transposase -
  H4P47_RS01415 (H4P47_01415) nikR 312820..313221 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  H4P47_RS01420 (H4P47_01420) nikE 313227..314033 (-) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  H4P47_RS01425 (H4P47_01425) amiE 314030..314794 (-) 765 WP_001136249.1 nickel import ATP-binding protein NikD Regulator
  H4P47_RS01430 (H4P47_01430) nikC 314794..315627 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  H4P47_RS01435 (H4P47_01435) nikB 315624..316568 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  H4P47_RS01440 (H4P47_01440) nikA 316568..318142 (-) 1575 WP_001686835.1 nickel ABC transporter substrate-binding protein -
  H4P47_RS01445 (H4P47_01445) acpT 318253..318840 (-) 588 WP_001411517.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26831.45 Da        Isoelectric Point: 6.5992

>NTDB_id=413109 H4P47_RS01425 WP_001136249.1 314030..314794(-) (amiE) [Escherichia coli strain G3/10]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAVALGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=413109 H4P47_RS01425 WP_001136249.1 314030..314794(-) (amiE) [Escherichia coli strain G3/10]
ATGCCGCAACAGATTGAACTGCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGTGGCGCTGGGAATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment