Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GSN03_RS21150 Genome accession   NZ_CP047366
Coordinates   4116855..4119194 (-) Length   779 a.a.
NCBI ID   WP_212088071.1    Uniprot ID   -
Organism   Bacillus nitratireducens strain BM02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4111855..4124194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS21125 - 4112736..4112912 (-) 177 WP_001242605.1 hypothetical protein -
  GSN03_RS21130 (GSN03_20960) - 4112996..4113328 (-) 333 WP_212088068.1 YrdB family protein -
  GSN03_RS21135 (GSN03_20965) - 4113444..4113884 (-) 441 WP_044737699.1 D-tyrosyl-tRNA(Tyr) deacylase -
  GSN03_RS21140 (GSN03_20970) relA 4113902..4116085 (-) 2184 WP_001262798.1 GTP diphosphokinase -
  GSN03_RS21145 (GSN03_20975) - 4116296..4116808 (-) 513 WP_000346222.1 adenine phosphoribosyltransferase -
  GSN03_RS21150 (GSN03_20980) recJ 4116855..4119194 (-) 2340 WP_212088071.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GSN03_RS21155 (GSN03_20985) - 4119296..4120189 (-) 894 WP_000409727.1 cation diffusion facilitator family transporter -
  GSN03_RS21160 (GSN03_20990) secDF 4120344..4122608 (-) 2265 WP_001119058.1 protein translocase subunit SecDF -
  GSN03_RS21165 (GSN03_20995) - 4122890..4123174 (-) 285 WP_000884547.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88099.54 Da        Isoelectric Point: 4.8392

>NTDB_id=413051 GSN03_RS21150 WP_212088071.1 4116855..4119194(-) (recJ) [Bacillus nitratireducens strain BM02]
MLQPKTRWKEKEYNDERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKDL
GIDLIITDHHEPPPELPEALAIIHPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDATPAVHLLLSDDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENNFPPEENKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPIKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDADLESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANVAELPTEKITMVYFSEEVLNKFSLEDYKEHIVHASDVTHLDDQYIVLLDLPKGTDELRD
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLNQKAPFSLKQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMAEQKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=413051 GSN03_RS21150 WP_212088071.1 4116855..4119194(-) (recJ) [Bacillus nitratireducens strain BM02]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGACGAGCGAGTGAGTGAATTAGCAAGTAAATTGCAATT
ATCACCTCTTGTTGTTTCGTTATTCCTCGGTAGAGGATTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCACGATCCATTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGATTACGATGCGGACGGAGTAAGTAGTACGACTGTCTTATATCTTGCGCTTCAAGAATT
AGGTGCAGATGTAGAATTTTATATTCCAAACCGTTTTACAGAAGGGTATGGACCAAACGAAGAAGCGTTTCGTTGGGCGC
ATAGCGCTGGGTTCTCGCTAATTATTACCGTAGATACTGGTATTGCAGCGGTACATGAAGCGAAGGTAGCGAAGGACCTT
GGAATAGATCTTATTATTACAGATCACCATGAGCCACCGCCAGAATTACCAGAAGCACTTGCAATTATTCATCCGAAATT
AGAAGGCGGTGTTTATCCGTTTCACTATTTAGCGGGTGTTGGTGTTGCGTTTAAAGTTGCACATGCACTACTAGGCCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATTGGTACAGTAGCCGATTTAGTGTCACTTCATGGTGAGAATAGATTGCTA
GTGAAGCGCGGTTTAAAGCATATGCGCATGACGAAAAATATCGGACTAAAGGCGCTATTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAGAGTATTGGTTTCTCACTCGCACCGCGTATTAATGCAGTTGGACGTTTAGAAGATGCTACGC
CGGCTGTACATCTTTTATTATCAGATGATCCAGAAGAAGCGAAAGAGCTTGCTGAAGAAATTGATGAGCTGAACAAACTT
CGAAAAGATATTGTAAAACAAATTACAGAAGAAGCTATCGCCGAAGTTGAAAATAATTTTCCGCCTGAAGAAAATAAGGT
GTTAGTACTAGCGAAAGAAGGCTGGAATCCAGGTGTAATTGGGATTGTTGCTTCTAAATTAGTTGAACGATTTTATCGTC
CAACGATTGTACTATGCATTGATCCTATAAAAGAAACGGCAAAGGGTTCAGCGCGTAGTATTGCAGGGTTTGATTTATTT
GCCAACTTGTCTGATTGTAGAGAGTTATTGCCACACTTCGGAGGACATCCGATGGCAGCCGGAATGACGCTACATATGAA
TGATGTAGATGAATTAAGACGCCGCTTAAATGAACAAGCAGAGGTAATTTTAACAGAAGAAGATTTTATTCCAATTACAG
CAGTTGATGCTTTTTGTAAGGTGGAGGATGTAACTCTTGCTGCAATTGAGGATATGCAAAAGTTAGCGCCGTTTGGTGTT
GGAAATCCCAAACCACGTATTGCGGTAAAAGATGCTGATTTAGAAAGCATTCGTGCAATCGGATCGGATGGATCTCATTT
AAAAATGGCGCTTCGTGATGGACAAGCAACACTGGATACAATTGGATTTGGATTTGGAGCTTATGCGAAAGAAATCTCTC
CAGTTGCGAAAGTTTCTGTAATAGGAGAAGCATCCATTAATGAATGGAATAATTTTAAGAAGCCGCAATTAATGGTACAA
GATATTGCTGTAGAGGCGTGGCAGCTATTTGATTGGCGTAGTATGCGTAATGTAGAAGCGAATGTAGCAGAACTTCCAAC
AGAAAAAATAACAATGGTGTATTTTTCTGAAGAGGTATTGAATAAATTTTCTTTAGAAGACTATAAAGAGCATATCGTGC
ATGCATCAGATGTAACGCATTTGGATGATCAATACATTGTGTTACTCGATTTACCGAAAGGAACAGATGAATTGCGCGAT
TTATTTAAAGTCGGGTTCCCATCTCGAATTTATACGCTATTTTATCAAGAGAATAACCATTTATTTAGTACAGTCCCAAC
GCGGGAACACTTTAAATGGTACTACTCTTTCTTGAACCAAAAAGCACCATTTTCTTTAAAACAATATGGGGAACAACTAT
GTCGTCATAAAGGTTGGTCAAAAGACACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GACGGTGTCATTTTTATGGCTGAACAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACGTGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.972

99.358

0.526

Multiple sequence alignment